| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528137
Identifier: 188528137
GI number: 188528137
Start: 1353392
End: 1354555
Strand: Reverse
Name: 188528137
Synonym: HPSH_06980
Alternate gene names: NA
Gene position: 1354555-1353392 (Counterclockwise)
Preceding gene: 188528138
Following gene: 188528136
Centisome position: 84.21
GC content: 36.43
Gene sequence:
>1164_bases ATGGGGTTTTTATTTGAAAAATCGTTAATGGGTTTTTGCATTCATTCAATCAAAATCGTTAAAACCATCGGTTTGATTTT AAGCCTTTTAGCCACCTTTTTGGTCGCTGAAAACACTCATGACCCAGAAGAAATCAAGGCTAAAGTGGTTTATGTGAAAA TCCCCCAATTAGAAGATTTGGAAAATAACCCGGTTTATATCGGTCAAATTATAGGCGTAACTTATGATTTATTGCTGTTT GACGCTGAGTTTTTGGAAGCCAAAATCAAAGACGGGCTAGATAAAACCCAAATTGAGCTTTTAAGCAAAATGCCTAAATG GAAAAAGGTGGAAAAAGAGCTTTTCAGAGCGACTTATTATTACAAGATTAAGGGCGTAAAAGCGAGCATTCCGCCTTTAG AAGTGAGCGCGTTTTCCAATAAAGACAAGTATATAGATTATTCCATAGCCCCAAAAGTTACTTTGCAAGTAACGGATTTA TCCAAAAACCCTCGTTACGCGAATGTCATGGCTAAAGATCTACAAGTTTTGCAATACAAAACCAAAGATTATGACGATAA AAACAATATTTTGGTGGTGGAATTAGCGTTCAAAGAGGCTAATTGGGAAGATTTTCACATCAAAGAAGCGCTAAAACAAG GGTTTGATAACGCCTCTTTAAACCAGATCAAGGCTAAAGAGGGGAGCGTTTTTTATTATTGCGTGTTGCCTAAAACCATT CAAAACCTTTCTTTTGATTATTTTTCGCTTTCTAATAGGCAATTTAAAACCTTATCTTTCTCAACCATTCCCACTCAAGA CACTACCGGTATTCAAAGCGATCTCATCCCTAAAAACAATTTTTTAGTCTTTTCTAATGTGGCGCTGCTCGCTTTGTGCG TGTTTTTCTTGGTGTTGTTTTTCATTTTTGGGCGCAAACTCATTTTTTTAGGGCTTGGGATTTTGTGCTTAGGGTTTGTT TTGTATAACCTTTTATTCACGCAAAAATCAGCCCTTTTGCTCGCTCATAAAAAAATCCGCATTCTGCCCACGCAGAATTC CACCATTTTAGGGCTTTCTAAAAATGAAATGCCGATTAAAATTTTAGGTTCGCATGATGATTATTATAAAATCCTAACGC CGCATGAACAAATAGGGTGGGTCAAAAAAGATGAAGTCAAATAA
Upstream 100 bases:
>100_bases CGATGATATTCAACTAAAAACCGCTATTGACAGCTTGAAAACCTGGTCTATCGTGGATGATAAAATGGATGAAAAAACGC CTAAGAAGAAATAAAAACTC
Downstream 100 bases:
>100_bases AAAATCCAATCGTTTAAGAGCGATTTATAGAGCTTTAGTGATCGCTATAGGCTTAGCCGTTATCATTGTTTTCAATTATT TTAACCGCAAAAACAATAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MGFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDLENNPVYIGQIIGVTYDLLLF DAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYYYKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDL SKNPRYANVMAKDLQVLQYKTKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFV LYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK
Sequences:
>Translated_387_residues MGFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDLENNPVYIGQIIGVTYDLLLF DAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYYYKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDL SKNPRYANVMAKDLQVLQYKTKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFV LYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK >Mature_386_residues GFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDLENNPVYIGQIIGVTYDLLLFD AEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYYYKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDLS KNPRYANVMAKDLQVLQYKTKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTIQ NLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFVL YNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44248; Mature: 44117
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCCC ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYY CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHEEE YKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK EEEECCEECCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHH TKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI CCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHEECCCCCEEEEEECCHHH QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF HHCCCCEEECCCCEEEEEEEEECCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHH FIFGRKLIFLGLGILCLGFVLYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCCEEEEECCCCCCEE ILGSHDDYYKILTPHEQIGWVKKDEVK EECCCCCEEEEECCHHHHCCCCCCCCC >Mature Secondary Structure GFLFEKSLMGFCIHSIKIVKTIGLILSLLATFLVAENTHDPEEIKAKVVYVKIPQLEDL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCCC ENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGLDKTQIELLSKMPKWKKVEKELFRATYY CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHEEE YKIKGVKASIPPLEVSAFSNKDKYIDYSIAPKVTLQVTDLSKNPRYANVMAKDLQVLQYK EEEECCEECCCCEEEEECCCCCCEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHH TKDYDDKNNILVVELAFKEANWEDFHIKEALKQGFDNASLNQIKAKEGSVFYYCVLPKTI CCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHEECCCCCEEEEEECCHHH QNLSFDYFSLSNRQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLF HHCCCCEEECCCCEEEEEEEEECCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHH FIFGRKLIFLGLGILCLGFVLYNLLFTQKSALLLAHKKIRILPTQNSTILGLSKNEMPIK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEEECCCCEEEEECCCCCCEE ILGSHDDYYKILTPHEQIGWVKKDEVK EECCCCCEEEEECCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA