| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528121
Identifier: 188528121
GI number: 188528121
Start: 1340420
End: 1341496
Strand: Direct
Name: 188528121
Synonym: HPSH_06890
Alternate gene names: NA
Gene position: 1340420-1341496 (Clockwise)
Preceding gene: 188528117
Following gene: 188528122
Centisome position: 83.33
GC content: 39.37
Gene sequence:
>1077_bases ATGATGACTTTTGATTCTCAAACTAACGCCAAGCTCTCGCGCTCTAACGAACAGCTCTCAGACATGCTCTATAAACTCAA TGAAAGTTTAAGAATCTATCAAAGCGTGCTTTCCAACAACCAAGATCAGCTTAAAGAAATCAAAAAAGCTAACAGCACCC TAAATAGCCAGAGGCGTTTTTTTAACGCCAGCCAAATCCGCCTTATGGACACTGATGCGTTATTGAAACAAAGTGCTTTG GAATTAGAAAAATTACAAGCTTTAGAAAAACGCTTAAAAGAGGGCATGGAACAAGAACGCTTAATAGAAGAATCCCAAAC GCTTTTTTTGCAAGAGCATTGCCCTTATTTGAGCGGCGTTAAGAATTTAGAAGAGGCTTCAAACGCTTTAGAAGTCCAAG AGCAAAGCAACGCCCTTTTCTTACTCAAAGAGCCTAAACTCGCCCGTTTGCTCTCACGATTGGATTTGATGAGCGCTTTA AACGCCTTATGCGATCAAGTTTTAGAAAACCAAGCCCATAACCAACAATCCCATAACAAAACCCTAGAATACAACGCTCT TATAAACCATGACTTTCAAGCCTATAAAGCCATGCGTTTGAAAAAATTTAAAAACAAGCTTCAAAGCCAGATCCAAGCTA AAGAAGACGCCCTAAAAACCTTTTTACCCTTAGAAAAACGCCTAGAAACTTTAAAAACGCATTTTTTATGCGATAAAGAA AATCTGAAATCATGCGCTAACCAATTGCGCCAACGCTACCAAAACGCCCTCATAGAGCGAGATAAAGAACTAAAAAACGC TAAAAATAATAAAGAAAAGCATGCTCTAATCTTAGCCAACTACGAGCATACGCTAAAAACCTTGAATGTAGAATTTTTAA GCGAATTGAGTGAGCAAATGGCGTTTTTGAATGAAACCATGGCATTAAACGCCAAAGTTTTGGCCCTTTTAGCCCAACAA CAGACTAAAAAGCCCTTCAATGCGAGCGGTGGTTTGAGCGGTGGGAAAGCCCTTATTAAAAATATCCGCTTAGATCCGCA TGGATTCCCTAGCTTTGAAAATTTTAAGCGGGAGTAG
Upstream 100 bases:
>100_bases CTTAGATAAAATAACACGATGAAATTATAGTAATAAAGATAACCCCATGAGATTTTTTTGCTTTTTCTTATTCTTTCTAA CCTTTTCAAACGCACAGATA
Downstream 100 bases:
>100_bases GACAATACTTGACAAGCAAAAACAATTAGAGTAAAGTAAGGGCATAACTTCTAGGAAGGATCTCTTTCATTAAGAGATCC CACGACCCTTGTGAACCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MMTFDSQTNAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKEIKKANSTLNSQRRFFNASQIRLMDTDALLKQSAL ELEKLQALEKRLKEGMEQERLIEESQTLFLQEHCPYLSGVKNLEEASNALEVQEQSNALFLLKEPKLARLLSRLDLMSAL NALCDQVLENQAHNQQSHNKTLEYNALINHDFQAYKAMRLKKFKNKLQSQIQAKEDALKTFLPLEKRLETLKTHFLCDKE NLKSCANQLRQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNVEFLSELSEQMAFLNETMALNAKVLALLAQQ QTKKPFNASGGLSGGKALIKNIRLDPHGFPSFENFKRE
Sequences:
>Translated_358_residues MMTFDSQTNAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKEIKKANSTLNSQRRFFNASQIRLMDTDALLKQSAL ELEKLQALEKRLKEGMEQERLIEESQTLFLQEHCPYLSGVKNLEEASNALEVQEQSNALFLLKEPKLARLLSRLDLMSAL NALCDQVLENQAHNQQSHNKTLEYNALINHDFQAYKAMRLKKFKNKLQSQIQAKEDALKTFLPLEKRLETLKTHFLCDKE NLKSCANQLRQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNVEFLSELSEQMAFLNETMALNAKVLALLAQQ QTKKPFNASGGLSGGKALIKNIRLDPHGFPSFENFKRE >Mature_358_residues MMTFDSQTNAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKEIKKANSTLNSQRRFFNASQIRLMDTDALLKQSAL ELEKLQALEKRLKEGMEQERLIEESQTLFLQEHCPYLSGVKNLEEASNALEVQEQSNALFLLKEPKLARLLSRLDLMSAL NALCDQVLENQAHNQQSHNKTLEYNALINHDFQAYKAMRLKKFKNKLQSQIQAKEDALKTFLPLEKRLETLKTHFLCDKE NLKSCANQLRQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNVEFLSELSEQMAFLNETMALNAKVLALLAQQ QTKKPFNASGGLSGGKALIKNIRLDPHGFPSFENFKRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41302; Mature: 41302
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTFDSQTNAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKEIKKANSTLNSQRRF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH FNASQIRLMDTDALLKQSALELEKLQALEKRLKEGMEQERLIEESQTLFLQEHCPYLSGV CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH KNLEEASNALEVQEQSNALFLLKEPKLARLLSRLDLMSALNALCDQVLENQAHNQQSHNK HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC TLEYNALINHDFQAYKAMRLKKFKNKLQSQIQAKEDALKTFLPLEKRLETLKTHFLCDKE CEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH NLKSCANQLRQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNVEFLSELSEQM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH AFLNETMALNAKVLALLAQQQTKKPFNASGGLSGGKALIKNIRLDPHGFPSFENFKRE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHCCCC >Mature Secondary Structure MMTFDSQTNAKLSRSNEQLSDMLYKLNESLRIYQSVLSNNQDQLKEIKKANSTLNSQRRF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH FNASQIRLMDTDALLKQSALELEKLQALEKRLKEGMEQERLIEESQTLFLQEHCPYLSGV CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH KNLEEASNALEVQEQSNALFLLKEPKLARLLSRLDLMSALNALCDQVLENQAHNQQSHNK HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC TLEYNALINHDFQAYKAMRLKKFKNKLQSQIQAKEDALKTFLPLEKRLETLKTHFLCDKE CEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH NLKSCANQLRQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNVEFLSELSEQM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH AFLNETMALNAKVLALLAQQQTKKPFNASGGLSGGKALIKNIRLDPHGFPSFENFKRE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA