| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is tenA [H]
Identifier: 188528076
GI number: 188528076
Start: 1311446
End: 1312102
Strand: Direct
Name: tenA [H]
Synonym: HPSH_06665
Alternate gene names: 188528076
Gene position: 1311446-1312102 (Clockwise)
Preceding gene: 188528074
Following gene: 188528077
Centisome position: 81.53
GC content: 36.53
Gene sequence:
>657_bases ATGCAAGTTTCACAATATCTGTATCAAAATGCGCAATCTATTTGGGGGGATTGTATTTCCCATCCGTTTGTTCAAGGCAT AGGGCATGGGACTTTAGAAAGAGATAAATTTCGTTTTTATATCATTCAGGATTATTTGTTTCTTTTAGAATACGCTAAGG TGTTTGCTTTAGGCGTAATTAAAGCTCATGATGAAATTGTGATGAGAGAGTTTTCTAACGCTATACAAGATATTTTGAAT AACGAGATGAGTATCCATAACCATTACATTAGAGAACTTCAAATCACTCAAATAGAATTGCAAAACGCGTGCCCCACCCT AGCGAATAAATCCTATACAAGCTACATGCTCGCTGAAGGGATTAAGGGCTCTATTAAAGAAGTTACGGCGGCTGTTTTGG CTTGTGGCTGGAGCTATTTAGTGATCGCGCAAAATTTAAGCCAAATCTCAAACGCTTTAGAACATGCCTTTTATGGGCAT TGGATTAAGGGCTATAGTTCCAAAGAATTTCAAGCGTGTGTGTCATGGAATATCAATTTGCTTGATTCCCTCACTCACGC TTCTTCAAAACAAGAAATTGAGAAGTTAAAGGACATTTTTATCACTACAAGTAAATATGAATACATGTTTTGGGATATGG CGTATCAAAAAAACTAA
Upstream 100 bases:
>100_bases AAGCAAGATCCTACCCACCAACCTTTTTAAAAACAAATTTTTATACCATATCACAAGTTTTCGTGTTAGAATGCGTTAAA TGGATTTTAGGAGTGTAAAA
Downstream 100 bases:
>100_bases TTCTCATTGATTCATGTTACAATCAAACTAAAGGGGTGCTTTTTAAAAACGCTCAAGTTTTTAAAAGGCTGAGATCAAAC CCATAGAACTTGTCAAGGTA
Product: putative transcriptional regulator
Products: NA
Alternate protein names: Thiaminase II; Transcriptional activator tenA [H]
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MQVSQYLYQNAQSIWGDCISHPFVQGIGHGTLERDKFRFYIIQDYLFLLEYAKVFALGVIKAHDEIVMREFSNAIQDILN NEMSIHNHYIRELQITQIELQNACPTLANKSYTSYMLAEGIKGSIKEVTAAVLACGWSYLVIAQNLSQISNALEHAFYGH WIKGYSSKEFQACVSWNINLLDSLTHASSKQEIEKLKDIFITTSKYEYMFWDMAYQKN
Sequences:
>Translated_218_residues MQVSQYLYQNAQSIWGDCISHPFVQGIGHGTLERDKFRFYIIQDYLFLLEYAKVFALGVIKAHDEIVMREFSNAIQDILN NEMSIHNHYIRELQITQIELQNACPTLANKSYTSYMLAEGIKGSIKEVTAAVLACGWSYLVIAQNLSQISNALEHAFYGH WIKGYSSKEFQACVSWNINLLDSLTHASSKQEIEKLKDIFITTSKYEYMFWDMAYQKN >Mature_218_residues MQVSQYLYQNAQSIWGDCISHPFVQGIGHGTLERDKFRFYIIQDYLFLLEYAKVFALGVIKAHDEIVMREFSNAIQDILN NEMSIHNHYIRELQITQIELQNACPTLANKSYTSYMLAEGIKGSIKEVTAAVLACGWSYLVIAQNLSQISNALEHAFYGH WIKGYSSKEFQACVSWNINLLDSLTHASSKQEIEKLKDIFITTSKYEYMFWDMAYQKN
Specific function: Stimulates the production of several extracellular degradative enzymes at the transcriptional level, probably by interfering with degS and degU, which are required for this effect. Is not an essential protein, but affects the sporulation frequency [H]
COG id: COG0819
COG function: function code K; Putative transcription activator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiaminase-2 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6325378, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324517, Length=205, Percent_Identity=25.8536585365854, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6324997, Length=205, Percent_Identity=25.3658536585366, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016084 - InterPro: IPR004305 [H]
Pfam domain/function: PF03070 TENA_THI-4 [H]
EC number: =3.5.99.2 [H]
Molecular weight: Translated: 25194; Mature: 25194
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVSQYLYQNAQSIWGDCISHPFVQGIGHGTLERDKFRFYIIQDYLFLLEYAKVFALGVI CCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KAHDEIVMREFSNAIQDILNNEMSIHNHYIRELQITQIELQNACPTLANKSYTSYMLAEG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHC IKGSIKEVTAAVLACGWSYLVIAQNLSQISNALEHAFYGHWIKGYSSKEFQACVSWNINL CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH LDSLTHASSKQEIEKLKDIFITTSKYEYMFWDMAYQKN HHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCC >Mature Secondary Structure MQVSQYLYQNAQSIWGDCISHPFVQGIGHGTLERDKFRFYIIQDYLFLLEYAKVFALGVI CCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KAHDEIVMREFSNAIQDILNNEMSIHNHYIRELQITQIELQNACPTLANKSYTSYMLAEG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHC IKGSIKEVTAAVLACGWSYLVIAQNLSQISNALEHAFYGHWIKGYSSKEFQACVSWNINL CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH LDSLTHASSKQEIEKLKDIFITTSKYEYMFWDMAYQKN HHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1898926; 9384377 [H]