| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528063
Identifier: 188528063
GI number: 188528063
Start: 1297391
End: 1299802
Strand: Direct
Name: 188528063
Synonym: HPSH_06600
Alternate gene names: NA
Gene position: 1297391-1299802 (Clockwise)
Preceding gene: 188528062
Following gene: 188528064
Centisome position: 80.66
GC content: 38.68
Gene sequence:
>2412_bases TTGTGGCTTAAGTCAAAAATCTTTCTTTTAATGGGTGTGAGTTTGCTCTCCCATTCTCTCAACGCTTTAAGCCTCACGCT CACGCAAGGCAAGGAAGGGGGGGAGGATTTTTCTGTTTTAACCTTACGACACAACAAAGCGTTTTCTTGTTTTTATACTC ATGAAAAACCACCAAGCGGGATTGAAGCGTCTTTATCCATTATACGCGCTAAACGCCCCATAGAATGCGTGATAGACTCT ATCCCTAAGGAGGGTTTTACCCCTTTAGAAAACGCTTTTTTCCATATCACCTATTCTATGCGCCAACAACAATTCATTTT ACACATCAAACCCAAAGTGATGCGAAGGCTCACCCTTTTTTCTTTTGACAGGGATTATAAAAAAGCGATCCCCCTTTTTG TGGAAAACGATCCTAAAGCCAAAATGTGGCAAATCATAGGCTATGATCAAAATATCCCTTTTTTGAGCGAAAAAAACAAC GCTCAAAAAGGCTTGAATTTCCCCATTGTCATTAAAGACGCTCAAACCCCTATCATTCAAGAGCTAGATGTGAATAACAA ACCCCTACTCACCACAAAGGGCTATGACTTAAACGCCTATTTAGAGGCTAAAAAACAAATCAATTCGCAAGCCTATTTTG ACGCTTTACGAACGATTAGCCGCGCGTTTAAAAACTACCCTCAAACGATTTTTAAAAAAGATTTGTATTTATTAGAAGTT ATCGCATTAGGCCAATTAGGCATTAAAAAATCCTTACTCATAGACATTGGTGCCAAGTGGATTAAAAATTACCCGACTGA TCCCAGTATCCCTGAAGTGTTATACTATGTCGCCAAAGCTTTAGACGAAAACAACAATTACAAACAGGCCATGCGCTATT ACAAACGCATTCTTTTAGAATACAAGAACTCGCGCTACGCTCCTTTAGCCCAAATGCGTTTAGCCATTGAAGCGGCTGAA GGCTCTGATTTGAGCAACGCTAGCATGCTTTTTAAAGAAGCTTTTTCTAACGCCAAAGACAAAGAGAGCGCGAGTGAGAT CGCTCTTAATTGGGCTGAAGCAGAGATAAACTATCAAAACTTTAATAACGCTAAATACCTCATTGATAAGGTGGTTCAAT CCAACCCTGATTATATTTCTAAACACAGCGAATCAGCCCTAGATTTGCTCAAATTATTGAAAAAAAACCAGATGAATGAA AGCGCGATTGAGATCGCTCACTTGCTCCTTAATCAAGACGATGATGCGAAAGCTAAAGAGCAAGCGCTTTATGATTTAGG GGCGTTGTATGCAAGGATCAAGGACTTTAAAAACGCCCACCTTTACAATCTGCAATATTTGCAAGATCATGCAGAATTGG ATAAAGCCTCTGTCGTTAGAGCGCGCGATGAAAAAGCCCTTTTTTCAATGGAGGGGAACACGCAAGAAAAAATCGCCCGC TATGACAAAATCATCCACAATTTCCCTAATTCTGATGAAGCCCTAAAGGCTTTAGAATTGAAAGCCCAACTCTTGTTTGA CAACAAGCGTTATACTGAAGTGTTAAACATGCAAAAAAATTTGCCTAAAGATTCTCTTTTGATCCAAAAAACGCTCAATA TCCTTGCTAAAACCCCATTAGAGGACAATCGTTGTAAAGAAGCCTTAAAATATTTATCCCAGATCACAGCCTTTGAATTC AGCCCCAAAGAAGAAATCCAAGCCTTTGATTGCTTGTATTTCGCATCGCTCAAAGAAAAAGCACAAATCATTGCCCTAAA CGCTTTAAAAGCGGCTAAAACCCCTAGCGAGAAATTGGTATGGCTTTATCGTTTGGGGCGCAATTACTACCGCTTAGGGG ATTTTAAAAATTCCACTCTGACCTCTAAAGACGCTTTAACTCTCGCTCAAAGCTTGGATAAAAAAGAATTTTACGATATT GCTTTTGTTTTATTTTCAGATTACATGCAAAACAACGAAAAAGAATTGGCCCTCCATTTGTATGCGTTTTTAGAAAAGCA TTTCAAAGACGATAAACGCATGGCGTTGGTTTATTTTAAATTGCTAGAAAATGAAAAAGATCCTAAAAGCGTCAAAATTT ATGCCACAAACTTACTCAAACTCCAAGACGCTTATAAGGACTATTCTTACACGCCCTTTAGCGAATTTGCCCTCATTGAC GCTTACAGAACCACCAAAGACTATTTAAAAGCGCTAGAAACGCTAGACAAACTTTTAAACCGCAGGCTTTCTTTAGAAGA TCACCAAAAAGCCTTATACTTGCAATCTGGCTTACTGGATCTAACCAATCAAAAAGCAAAATCTAGAGCCAGTTTAGAAA AATGCGTTCAGTTAAAGCAAAAAGATCAAACAAACGCATGGCAAAATTTATGCGAACAGGGTTTAAATTTATTCAAAAAC AAGGAGTCATAA
Upstream 100 bases:
>100_bases ATTTACACCCAAAACGCTACCATGCCCATTTATGCGGTCGTTATTGCCATGGCGTTAGCGTGCTTGTTCTCTGTTTTTAT GATGCGAGGGCTTTTAGAGT
Downstream 100 bases:
>100_bases CATGGACATTAGCATTTTTAGAGAATATGATATTAGAGGCATTTACCCCACCACTTTAGATGAAAAGAGCACCTTTAGTA TCGGCGTGGAGTTAGGGAAA
Product: paralysed flagella protein
Products: NA
Alternate protein names: Flagellar Functional Protein; Paralysed Flagella Protein PflA; Paralysed Flagellum Protein PflA; Tetratricopeptide Tpr_1 Repeat-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Paralyzed Flagella Protein PflA; Tetratricopeptide Repeat Domain Protein
Number of amino acids: Translated: 803; Mature: 803
Protein sequence:
>803_residues MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSGIEASLSIIRAKRPIECVIDS IPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLFSFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNN AQKGLNFPIVIKDAQTPIIQELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLEYKNSRYAPLAQMRLAIEAAE GSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNE SAIEIAHLLLNQDDDAKAKEQALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPLEDNRCKEALKYLSQITAFEF SPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLVWLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDI AFVLFSDYMQNNEKELALHLYAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQKDQTNAWQNLCEQGLNLFKN KES
Sequences:
>Translated_803_residues MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSGIEASLSIIRAKRPIECVIDS IPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLFSFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNN AQKGLNFPIVIKDAQTPIIQELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLEYKNSRYAPLAQMRLAIEAAE GSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNE SAIEIAHLLLNQDDDAKAKEQALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPLEDNRCKEALKYLSQITAFEF SPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLVWLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDI AFVLFSDYMQNNEKELALHLYAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQKDQTNAWQNLCEQGLNLFKN KES >Mature_803_residues MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSGIEASLSIIRAKRPIECVIDS IPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLFSFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNN AQKGLNFPIVIKDAQTPIIQELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLEYKNSRYAPLAQMRLAIEAAE GSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQNFNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNE SAIEIAHLLLNQDDDAKAKEQALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPLEDNRCKEALKYLSQITAFEF SPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLVWLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDI AFVLFSDYMQNNEKELALHLYAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQKDQTNAWQNLCEQGLNLFKN KES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92710; Mature: 92710
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSG CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCC IEASLSIIRAKRPIECVIDSIPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLF HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCEEEEEEECCCCEEEEEECHHHHHHHHHH SFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNNAQKGLNFPIVIKDAQTPIIQ HCCCCHHHHCCEEECCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH ELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV HCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLE HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH YKNSRYAPLAQMRLAIEAAEGSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQN HCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHEEHHHEEEECCC FNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNESAIEIAHLLLNQDDDAKAKE CCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH QALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHCCCHHEEEECCCCHHHHHH YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPL HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC EDNRCKEALKYLSQITAFEFSPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLV CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCHHHHH WLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDIAFVLFSDYMQNNEKELALHL HHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH YAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID HHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHH AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQ HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH KDQTNAWQNLCEQGLNLFKNKES CCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MWLKSKIFLLMGVSLLSHSLNALSLTLTQGKEGGEDFSVLTLRHNKAFSCFYTHEKPPSG CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCCC IEASLSIIRAKRPIECVIDSIPKEGFTPLENAFFHITYSMRQQQFILHIKPKVMRRLTLF HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCEEEEEEECCCCEEEEEECHHHHHHHHHH SFDRDYKKAIPLFVENDPKAKMWQIIGYDQNIPFLSEKNNAQKGLNFPIVIKDAQTPIIQ HCCCCHHHHCCEEECCCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH ELDVNNKPLLTTKGYDLNAYLEAKKQINSQAYFDALRTISRAFKNYPQTIFKKDLYLLEV HCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IALGQLGIKKSLLIDIGAKWIKNYPTDPSIPEVLYYVAKALDENNNYKQAMRYYKRILLE HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH YKNSRYAPLAQMRLAIEAAEGSDLSNASMLFKEAFSNAKDKESASEIALNWAEAEINYQN HCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHEEHHHEEEECCC FNNAKYLIDKVVQSNPDYISKHSESALDLLKLLKKNQMNESAIEIAHLLLNQDDDAKAKE CCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH QALYDLGALYARIKDFKNAHLYNLQYLQDHAELDKASVVRARDEKALFSMEGNTQEKIAR HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCHHHHHHHCCCHHEEEECCCCHHHHHH YDKIIHNFPNSDEALKALELKAQLLFDNKRYTEVLNMQKNLPKDSLLIQKTLNILAKTPL HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC EDNRCKEALKYLSQITAFEFSPKEEIQAFDCLYFASLKEKAQIIALNALKAAKTPSEKLV CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCHHHHH WLYRLGRNYYRLGDFKNSTLTSKDALTLAQSLDKKEFYDIAFVLFSDYMQNNEKELALHL HHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH YAFLEKHFKDDKRMALVYFKLLENEKDPKSVKIYATNLLKLQDAYKDYSYTPFSEFALID HHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHH AYRTTKDYLKALETLDKLLNRRLSLEDHQKALYLQSGLLDLTNQKAKSRASLEKCVQLKQ HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH KDQTNAWQNLCEQGLNLFKNKES CCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA