| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527959
Identifier: 188527959
GI number: 188527959
Start: 1191785
End: 1192336
Strand: Direct
Name: 188527959
Synonym: HPSH_06070
Alternate gene names: NA
Gene position: 1191785-1192336 (Clockwise)
Preceding gene: 188527958
Following gene: 188527963
Centisome position: 74.09
GC content: 39.86
Gene sequence:
>552_bases ATGAGTTATTTTTATAAGCGTTGTTTGAAATTTTCATTGGTTGGGTTGCTAGGGCTTTTGAGCGTTCAGCTTGATGCTAG GAGTTTTATTGATGGGGATTTAGACATTCAAAAATTCAGCTATGAAGATTCTCTGCTTAAAAAGGGAGATCCTAATGGCG TACATAAGGTGCAGGTGCGAAACTATAAGGGCAAAATGGAAGAAGCTGAAATCCACTCAGAAATACGCATCGCGCTCAAA CCGGGGGTTAAAAAAGAAGTTAAAAAAGGCAAGATTTATAGCGCTCAAATCAATGATGGCATGTGCTATGCTTTTAGAAT GCTCCAAACCGGCGATAACACCACAGGCCTTGATCCTAAAGAATTCCCCAAGCAAAGCCGTGAAAAAAAGGGCCGAGTGG TTACTTTAATCGGTAAAGATGAAGTGCCTTATCTTATTTTAGAGACAGATTGCCAAGTGGGCGATATTGCAAAGATTTCT TTGGTGGGTAATTTTGATGGCACCGGTTTTCTTACAGAATATAAATTCAAAGACGCCAAACCCATTTACTAG
Upstream 100 bases:
>100_bases TGATGGAGCGTGTTTTGATCGCTAAATTAGCGGTTTTGTGATCTTTTTGTTTTTAATTTTGAGATATATTTGTTTGATTT TACATTGAAAGGATTTGTTG
Downstream 100 bases:
>100_bases TCTTTATTCTTTGCTCCATTCTTAAAATCTCTTAATCTTTTGTGGTTAGGAGGTTTTTCTTATTCGTTGAGAGTGTTTGT GATCGCACCTTAAAAATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MSYFYKRCLKFSLVGLLGLLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQVRNYKGKMEEAEIHSEIRIALK PGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDPKEFPKQSREKKGRVVTLIGKDEVPYLILETDCQVGDIAKIS LVGNFDGTGFLTEYKFKDAKPIY
Sequences:
>Translated_183_residues MSYFYKRCLKFSLVGLLGLLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQVRNYKGKMEEAEIHSEIRIALK PGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDPKEFPKQSREKKGRVVTLIGKDEVPYLILETDCQVGDIAKIS LVGNFDGTGFLTEYKFKDAKPIY >Mature_182_residues SYFYKRCLKFSLVGLLGLLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQVRNYKGKMEEAEIHSEIRIALKP GVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDPKEFPKQSREKKGRVVTLIGKDEVPYLILETDCQVGDIAKISL VGNFDGTGFLTEYKFKDAKPIY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20673; Mature: 20542
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYFYKRCLKFSLVGLLGLLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQVR CCHHHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCEEEECCCHHHHHCCCCCCEEEEEEE NYKGKMEEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDPK CCCCCCHHHHHCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCCHH EFPKQSREKKGRVVTLIGKDEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKDAK HHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCC PIY CCC >Mature Secondary Structure SYFYKRCLKFSLVGLLGLLSVQLDARSFIDGDLDIQKFSYEDSLLKKGDPNGVHKVQVR CHHHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCEEEECCCHHHHHCCCCCCEEEEEEE NYKGKMEEAEIHSEIRIALKPGVKKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDPK CCCCCCHHHHHCCEEEEEECCCCHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCCHH EFPKQSREKKGRVVTLIGKDEVPYLILETDCQVGDIAKISLVGNFDGTGFLTEYKFKDAK HHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCC PIY CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA