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The map label for this gene is ybeY [C]

Identifier: 188527944

GI number: 188527944

Start: 1178623

End: 1179045

Strand: Reverse

Name: ybeY [C]

Synonym: HPSH_05985

Alternate gene names: 188527944

Gene position: 1179045-1178623 (Counterclockwise)

Preceding gene: 188527945

Following gene: 188527937

Centisome position: 73.3

GC content: 41.61

Gene sequence:

>423_bases
ATGCTAGAAATAGACAACCAAACCCCGCTAGAATCAGACTTTTTATCATTAGAAAAAATCGCAAATGTTTTAGCCCCCAC
TCAAACCATTGAGCTTGTTTTAGTGAGCGATGAAACCATGCGAGAAATCAATAGGGATTCAAGGGGTTGCGATTACGCTA
CTGATGTTTTGAGCTTCCCTTTAGAAGCCATTCCTCACACCCCTTTAGGGAGCGTGGTCATTAACATGCCATTAGCTCAA
GAAAGTGCCCTGAAATTAGGGCATAGATTAGAAGATGAGATCGCTCTTTTATTCATTCATGGGGTGTTGCACTTGTTAGG
CTATGACCATGAAAAAGATAAGGGCGAACAACGCCAAAAAGAGAGCGAACTCATTAAGACTTTTAACTTGCCTTTGAGTT
TGATTGAACGCGCACAGGATTAG

Upstream 100 bases:

>100_bases
GAGAGGATTTCAAAATGGGTAGAACAAATTAAAGGTTCTTTCGCTTAATCTTATAAGCCCTAAATTTTAGGGCTTTTTTA
AACTCCTTTTTATATCTTTA

Downstream 100 bases:

>100_bases
TTTTAGATCTTCTCTAACGCTGACAAATAAAGCTTTTAATTTTTAAGAATGGAATTTTTAAAGCCCTTCATAATAATACG
ACTGCGTGATGCCTTTAATG

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MLEIDNQTPLESDFLSLEKIANVLAPTQTIELVLVSDETMREINRDSRGCDYATDVLSFPLEAIPHTPLGSVVINMPLAQ
ESALKLGHRLEDEIALLFIHGVLHLLGYDHEKDKGEQRQKESELIKTFNLPLSLIERAQD

Sequences:

>Translated_140_residues
MLEIDNQTPLESDFLSLEKIANVLAPTQTIELVLVSDETMREINRDSRGCDYATDVLSFPLEAIPHTPLGSVVINMPLAQ
ESALKLGHRLEDEIALLFIHGVLHLLGYDHEKDKGEQRQKESELIKTFNLPLSLIERAQD
>Mature_140_residues
MLEIDNQTPLESDFLSLEKIANVLAPTQTIELVLVSDETMREINRDSRGCDYATDVLSFPLEAIPHTPLGSVVINMPLAQ
ESALKLGHRLEDEIALLFIHGVLHLLGYDHEKDKGEQRQKESELIKTFNLPLSLIERAQD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 15759; Mature: 15759

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIDNQTPLESDFLSLEKIANVLAPTQTIELVLVSDETMREINRDSRGCDYATDVLSFP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHCC
LEAIPHTPLGSVVINMPLAQESALKLGHRLEDEIALLFIHGVLHLLGYDHEKDKGEQRQK
HHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ESELIKTFNLPLSLIERAQD
HHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure
MLEIDNQTPLESDFLSLEKIANVLAPTQTIELVLVSDETMREINRDSRGCDYATDVLSFP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHCC
LEAIPHTPLGSVVINMPLAQESALKLGHRLEDEIALLFIHGVLHLLGYDHEKDKGEQRQK
HHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ESELIKTFNLPLSLIERAQD
HHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA