| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is fic [C]
Identifier: 188527943
GI number: 188527943
Start: 1178032
End: 1178565
Strand: Direct
Name: fic [C]
Synonym: HPSH_05980
Alternate gene names: 188527943
Gene position: 1178032-1178565 (Clockwise)
Preceding gene: 188527942
Following gene: 188527947
Centisome position: 73.24
GC content: 36.52
Gene sequence:
>534_bases ATGCATTTAGACAGGCAGAGTTTAGAAAAAGCCAAGCATTTGATCCAAAGCGGTCTGATTGACACCATAGAAGTAGGCAC AATCAAGGGCTTGCAAGAAATCCATCGGTTTTTGTTTGAAGGGTTGTATGAATTTGCTGGGAAAATCAGGGATAAAAATA TTGCTAAAGGGAATTTCAGATTCGCTAACTGCTTGTATTTGGATTTGATTTTACCCAGAATTGAAAGCATGCCACAAAGC AATTTCAATCAAATCATAGAAAAATATGTGGAAATGAATATCGCTCACCCTTTTTTGGATGGTAATGGCAGAGCGGCTAG GATATGGCTTGATTTATTGCTTAAAAAGGAATTGAAAAAAATCGTGCTTTGGGATAGGATTGATAAAGCCGCTTATTTGA GTGCAATGGAAAGGAGTCCGGTGAATGATTTGGAAATCAAAACGCTTTTAAAAAAACATTTAAGTTCTAATACCAACGAT CCTTTAACCTTCATTAAAGGCATCACGCAGTCGTATTATTATGAAGGGCTTTAA
Upstream 100 bases:
>100_bases GTTTTAGAAAAAAGGGGGTTAGGGGAGCGTTTATCAAAGCATGCCAAAAGAGCGTGAAAAAAATGCACCCTAAAAATTAC ACTCTTAAAAAATAAGCGCG
Downstream 100 bases:
>100_bases AAATTCCATTCTTAAAAATTAAAAGCTTTATTTGTCAGCGTTAGAGAAGATCTAAAACTAATCCTGTGCGCGTTCAATCA AACTCAAAGGCAAGTTAAAA
Product: cell filamentation protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQS NFNQIIEKYVEMNIAHPFLDGNGRAARIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTND PLTFIKGITQSYYYEGL
Sequences:
>Translated_177_residues MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQS NFNQIIEKYVEMNIAHPFLDGNGRAARIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTND PLTFIKGITQSYYYEGL >Mature_177_residues MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQS NFNQIIEKYVEMNIAHPFLDGNGRAARIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTND PLTFIKGITQSYYYEGL
Specific function: Probable adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins [H]
COG id: COG2184
COG function: function code D; Protein involved in cell division
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fido domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003812 [H]
Pfam domain/function: PF02661 Fic [H]
EC number: NA
Molecular weight: Translated: 20510; Mature: 20510
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFR CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH FANCLYLDLILPRIESMPQSNFNQIIEKYVEMNIAHPFLDGNGRAARIWLDLLLKKELKK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH IVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTFIKGITQSYYYEGL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFR CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH FANCLYLDLILPRIESMPQSNFNQIIEKYVEMNIAHPFLDGNGRAARIWLDLLLKKELKK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH IVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTFIKGITQSYYYEGL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]