Click here to switch to the map view.

The map label for this gene is cmoB [H]

Identifier: 188527818

GI number: 188527818

Start: 1046124

End: 1046909

Strand: Reverse

Name: cmoB [H]

Synonym: HPSH_05315

Alternate gene names: 188527818

Gene position: 1046909-1046124 (Counterclockwise)

Preceding gene: 188527819

Following gene: 188527817

Centisome position: 65.08

GC content: 38.17

Gene sequence:

>786_bases
ATGCTCATTTGTAACGATAAGTCCAATCCAAAAACCCTTTTAGAAGAAATCATGGCGTTAAGGCCATGGCGTAAAGGCCC
TTTTGAAATTTCTCAAATCAAGATTGACAGCGAATGGGATAGCTCTATTAAATGGGATTTAGTCAAAAACGCCACTCCTT
TAAAAGATAAGGTTGTGGCTGATGTGGGTTGCAATAACGGCTATTACTTGTTTAAAATGCTAGAACATGGGCCTAAAAGT
TTGGTGGGGTTTGATCCGGGCGTTTTAGTCAAAAAACAATTTGAATTTTTAGCCCCCTTTTTTGATAAAGAAAAAAAAAT
CATTTACGAGTCTTTAGGGGTAGAGGATTTGCATGAAAAATACCCTAACGCTTTTGATGTCATTTTTTGCTTAGGGGTGC
TATACCATAGAAAAAGCCCGCTAGAGGCTTTAAAAGCCTTGTATCATGCTTTAAAAATGAGTGGGGAGTTGGTGTTGGAC
ACTTTAATCATTGATTCGCCCCTAGACATCGCCCTTTGCCCTAAAAAAACTTACGCTAAAATGAAAAATGTTTATTTTAT
CCCCAGTGTTAGTGCGCTAAAAGGGTGGTGCGAAAGGGTAGGGTTTGAAAATTTTGAAATTCTTAGCGTTTTAAAGACCA
CGCCTAAAGAGCAGCGTAAAACGGATTTTATTTTGGGGCAGAGTTTGGAAGATTTTTTGGATAAAACAGATCCCTCCAAA
ACTTTAGAGGGGTATGACGCTCCTTTAAGGGGGTATTTTAAAATGCTTAAACCAAGCAAGCTTTAA

Upstream 100 bases:

>100_bases
AGCGTTTAATTTCGCTTTTATTTATGGGATTAGCTCCCATCATTTAGAATCCCTTCTAAACCCCCCTTTTTTTAAAAAAA
CCCCCACGCTATGGTAAGTC

Downstream 100 bases:

>100_bases
ATAAAGGATAAAATAGTGCAAGAATCAGTCGTTCGTGTGGATTATGACTCTTTAGAAACTTGTAAGAATTTCAAACCAAG
CGTTGGCACTGAATTGGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKS
LVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKMSGELVLD
TLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK
TLEGYDAPLRGYFKMLKPSKL

Sequences:

>Translated_261_residues
MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKS
LVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKMSGELVLD
TLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK
TLEGYDAPLRGYFKMLKPSKL
>Mature_261_residues
MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVADVGCNNGYYLFKMLEHGPKS
LVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEKYPNAFDVIFCLGVLYHRKSPLEALKALYHALKMSGELVLD
TLIIDSPLDIALCPKKTYAKMKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK
TLEGYDAPLRGYFKMLKPSKL

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

Organism=Escherichia coli, GI1788178, Length=249, Percent_Identity=44.1767068273092, Blast_Score=210, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 29854; Mature: 29854

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA
CEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEHHCCCCCCHHHHEE
DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK
ECCCCCCEEEHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
YPNAFDVIFCLGVLYHRKSPLEALKALYHALKMSGELVLDTLIIDSPLDIALCPKKTYAK
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCHHHHHH
MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK
HHCEEECCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCH
TLEGYDAPLRGYFKMLKPSKL
HHCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MLICNDKSNPKTLLEEIMALRPWRKGPFEISQIKIDSEWDSSIKWDLVKNATPLKDKVVA
CEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEHHCCCCCCHHHHEE
DVGCNNGYYLFKMLEHGPKSLVGFDPGVLVKKQFEFLAPFFDKEKKIIYESLGVEDLHEK
ECCCCCCEEEHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
YPNAFDVIFCLGVLYHRKSPLEALKALYHALKMSGELVLDTLIIDSPLDIALCPKKTYAK
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCHHHHHH
MKNVYFIPSVSALKGWCERVGFENFEILSVLKTTPKEQRKTDFILGQSLEDFLDKTDPSK
HHCEEECCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCH
TLEGYDAPLRGYFKMLKPSKL
HHCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA