Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527813

Identifier: 188527813

GI number: 188527813

Start: 1041604

End: 1042443

Strand: Direct

Name: 188527813

Synonym: HPSH_05290

Alternate gene names: NA

Gene position: 1041604-1042443 (Clockwise)

Preceding gene: 188527812

Following gene: 188527814

Centisome position: 64.75

GC content: 40.71

Gene sequence:

>840_bases
ATGGGTTTTCAAAACGAAAATCAGTTAAAATTAGGCGCGTTGGTCAAAGCCACAATCAACGACAAAGTGGTGGAGGCTAA
AGCCATTAGTGTTGGGTTTAATCATGTAACCTTAAGGAGCCAAAAAGGCAACGAAGTCTCATACGCCAATAGCGAAAAGT
TCTTAAAGTGGTTTAATCATGTGCCTTTGAGTGAAGTTGCGAAAAATCACGCTGAAAGCGGTAAAAAAGACCTTTTAGAG
GGTCTTAAAATCGTTACGAGCGGTCCAAGTGTTAAGGAAAGGACTTCTACTCCTAAAGAGAAAGAGAATAAATATAAACT
CGCTTTTGGATTTAGGGGTGTTAGTGAGGAGGGTGTAAGTGTGTCGGAGGTTATGATTGGGGATTATACTCTATCCGAGA
GAAAAAGTAGGTTAGGTGCGTTATTGTCTCCTTTGTTTTTTGAGGGTAAGGGGTTTCAAGCGGTCGCTATCATTATAACC
GCTCTTGGGTGTGCTAAAGATTTAAATAAGCATAGCGATGCGGAGTGGTTTAAAATGATTGAAGCTCGCAACGAGGAGGA
GTGCGATTACGATACTTTTGATTATATGGATAGGGTTGGGACTACTTTATTCTGTAATGTTATCCGTGAGTATGCGTTAA
GGCTTGATAAAGAATTAGAAGCCGAGTTTAACGATTTCTCGCCGAGTGGTTTTTGGGCGCGAACCTTACCTAAAAACAAA
AATGAGGCGTTGTTTATCGCTCAACTTTTAAGCGATGGCGGTATCAATAAATACGGCTTAAGTTGTGCGGGTCTTACTCC
TGGATTATTAGCTGATAATCTTTACTCTTACGGCATGTGA

Upstream 100 bases:

>100_bases
AAACCCCAACAAGGAGGAACAAGCCATGCTGAAAAGATAAAAAACATTAAACAACTGATTGCAAGCGGATTTTAAAATTT
AAAATTGCGAGGAGCTAAAA

Downstream 100 bases:

>100_bases
GATGAGTTGTATGATGAGGGTAATGTGATTGCGGAGGGCGATGAGATTGATGAGTATCTTGCTAATTTAGATAATGAGGA
GGGGGTTGAAAATTAAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MGFQNENQLKLGALVKATINDKVVEAKAISVGFNHVTLRSQKGNEVSYANSEKFLKWFNHVPLSEVAKNHAESGKKDLLE
GLKIVTSGPSVKERTSTPKEKENKYKLAFGFRGVSEEGVSVSEVMIGDYTLSERKSRLGALLSPLFFEGKGFQAVAIIIT
ALGCAKDLNKHSDAEWFKMIEARNEEECDYDTFDYMDRVGTTLFCNVIREYALRLDKELEAEFNDFSPSGFWARTLPKNK
NEALFIAQLLSDGGINKYGLSCAGLTPGLLADNLYSYGM

Sequences:

>Translated_279_residues
MGFQNENQLKLGALVKATINDKVVEAKAISVGFNHVTLRSQKGNEVSYANSEKFLKWFNHVPLSEVAKNHAESGKKDLLE
GLKIVTSGPSVKERTSTPKEKENKYKLAFGFRGVSEEGVSVSEVMIGDYTLSERKSRLGALLSPLFFEGKGFQAVAIIIT
ALGCAKDLNKHSDAEWFKMIEARNEEECDYDTFDYMDRVGTTLFCNVIREYALRLDKELEAEFNDFSPSGFWARTLPKNK
NEALFIAQLLSDGGINKYGLSCAGLTPGLLADNLYSYGM
>Mature_278_residues
GFQNENQLKLGALVKATINDKVVEAKAISVGFNHVTLRSQKGNEVSYANSEKFLKWFNHVPLSEVAKNHAESGKKDLLEG
LKIVTSGPSVKERTSTPKEKENKYKLAFGFRGVSEEGVSVSEVMIGDYTLSERKSRLGALLSPLFFEGKGFQAVAIIITA
LGCAKDLNKHSDAEWFKMIEARNEEECDYDTFDYMDRVGTTLFCNVIREYALRLDKELEAEFNDFSPSGFWARTLPKNKN
EALFIAQLLSDGGINKYGLSCAGLTPGLLADNLYSYGM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31011; Mature: 30879

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFQNENQLKLGALVKATINDKVVEAKAISVGFNHVTLRSQKGNEVSYANSEKFLKWFNH
CCCCCCCCEEHHHHEEEHHCCHHEEHEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHC
VPLSEVAKNHAESGKKDLLEGLKIVTSGPSVKERTSTPKEKENKYKLAFGFRGVSEEGVS
CCHHHHHHHHHCCCHHHHHHHHEEHCCCCCCHHHCCCCCCCCCCEEEEEEECCCCCCCCC
VSEVMIGDYTLSERKSRLGALLSPLFFEGKGFQAVAIIITALGCAKDLNKHSDAEWFKMI
HHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
EARNEEECDYDTFDYMDRVGTTLFCNVIREYALRLDKELEAEFNDFSPSGFWARTLPKNK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEECCCCCC
NEALFIAQLLSDGGINKYGLSCAGLTPGLLADNLYSYGM
CCHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
GFQNENQLKLGALVKATINDKVVEAKAISVGFNHVTLRSQKGNEVSYANSEKFLKWFNH
CCCCCCCEEHHHHEEEHHCCHHEEHEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHC
VPLSEVAKNHAESGKKDLLEGLKIVTSGPSVKERTSTPKEKENKYKLAFGFRGVSEEGVS
CCHHHHHHHHHCCCHHHHHHHHEEHCCCCCCHHHCCCCCCCCCCEEEEEEECCCCCCCCC
VSEVMIGDYTLSERKSRLGALLSPLFFEGKGFQAVAIIITALGCAKDLNKHSDAEWFKMI
HHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
EARNEEECDYDTFDYMDRVGTTLFCNVIREYALRLDKELEAEFNDFSPSGFWARTLPKNK
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEECCCCCC
NEALFIAQLLSDGGINKYGLSCAGLTPGLLADNLYSYGM
CCHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA