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The map label for this gene is glyQ

Identifier: 188527781

GI number: 188527781

Start: 1000495

End: 1001391

Strand: Reverse

Name: glyQ

Synonym: HPSH_05060

Alternate gene names: 188527781

Gene position: 1001391-1000495 (Counterclockwise)

Preceding gene: 188527782

Following gene: 188527780

Centisome position: 62.25

GC content: 41.81

Gene sequence:

>897_bases
ATGCAAGATTTTTCAAGTTTATTATTAAAATTACAAGAGTATTGGAAGAATCAAGGTTGTTTGGTGATTCAGCCTTATGA
TATTCCTGCAGGAGCTGGGACATTCCACCCGGCCACGCTTTTAAGGAGTTTGGATAAAAAGCCGTGGAATGTGGCGTATG
TCGCGCCCTCTAGAAGGCCTACTGATGGGCGCTATGGGGAAAACCCTAACCGCTTGGGGAGTTATTACCAATTCCAAGTG
GTCATCAAGCCAAGCCCTTCTAATATCCAAGAACTCTATTTAAAAAGCTTAGAAGTGTTAGGGATAAACCTTAAGGAGCA
TGATATACGATTTGTAGAAGACAATTGGGAGAGTCCGACTTTGGGGGCATGGGGGCTTGGTTGGGAAGTGTGGCTTGATG
GCATGGAGGTTACGCAATTCACTTATTTCCAGCAAGTGGGGGGCATTGCTTGTAACCCTATCCCTGTAGAAATCACTTAC
GGCTTAGAAAGATTGGCGATGTATGTCCAAAAAGTGGAAAATATCCTAGAGATTGAATGGGCTAAAAAAAATCATGACAG
CGTGAATTACGCGCAAGTGCATTTAGAAAGCGAATACGAATTTAGCAAGTATCATTTTGAAATAGCGAGCGTGAAAAGGC
TGTTAGAAATGTTTAAAAACGCACAAGCTGAAGCCTTGCATTGCTTGGAAAACAAGCTCCCGCTACCCGCTTATGATTTT
GTGATGCTATGCTCGCATTTTTTCAATATTTTAGACGCCAGAAAAGCGATTTCGGTGGCTGAAAGGCAAAATTATATTTT
ACAAATCAGGGATTTAACAAAAGGGTGCGCCATTCTTTATAAAGAGCAAGAAGAAGAGAGGGAAGAGCGCCTAAAAAACG
CTTTAACAAAGGCTTAA

Upstream 100 bases:

>100_bases
TATACGCCCATTGCGAGCGAATTAGCCTTGCTTTTAAAGGGTAAGAGTGTGCTAGAGAGCATGAACGATTTGATCAGACG
CGCTTAAAAGGAAAGAGAGC

Downstream 100 bases:

>100_bases
AATGGCGTTAGTTAAGGAAGTGTTGGAAGTTTTAGAGCGCCTTTCGCCTTTTGAACTTCAAGAATCATGGGATAATAGCG
GGTTGAATGTGGGGAGTGAA

Product: glycyl-tRNA synthetase subunit alpha

Products: NA

Alternate protein names: Glycine--tRNA ligase alpha subunit; GlyRS [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MQDFSSLLLKLQEYWKNQGCLVIQPYDIPAGAGTFHPATLLRSLDKKPWNVAYVAPSRRPTDGRYGENPNRLGSYYQFQV
VIKPSPSNIQELYLKSLEVLGINLKEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIACNPIPVEITY
GLERLAMYVQKVENILEIEWAKKNHDSVNYAQVHLESEYEFSKYHFEIASVKRLLEMFKNAQAEALHCLENKLPLPAYDF
VMLCSHFFNILDARKAISVAERQNYILQIRDLTKGCAILYKEQEEEREERLKNALTKA

Sequences:

>Translated_298_residues
MQDFSSLLLKLQEYWKNQGCLVIQPYDIPAGAGTFHPATLLRSLDKKPWNVAYVAPSRRPTDGRYGENPNRLGSYYQFQV
VIKPSPSNIQELYLKSLEVLGINLKEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIACNPIPVEITY
GLERLAMYVQKVENILEIEWAKKNHDSVNYAQVHLESEYEFSKYHFEIASVKRLLEMFKNAQAEALHCLENKLPLPAYDF
VMLCSHFFNILDARKAISVAERQNYILQIRDLTKGCAILYKEQEEEREERLKNALTKA
>Mature_298_residues
MQDFSSLLLKLQEYWKNQGCLVIQPYDIPAGAGTFHPATLLRSLDKKPWNVAYVAPSRRPTDGRYGENPNRLGSYYQFQV
VIKPSPSNIQELYLKSLEVLGINLKEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIACNPIPVEITY
GLERLAMYVQKVENILEIEWAKKNHDSVNYAQVHLESEYEFSKYHFEIASVKRLLEMFKNAQAEALHCLENKLPLPAYDF
VMLCSHFFNILDARKAISVAERQNYILQIRDLTKGCAILYKEQEEEREERLKNALTKA

Specific function: Unknown

COG id: COG0752

COG function: function code J; Glycyl-tRNA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Escherichia coli, GI1789983, Length=284, Percent_Identity=61.2676056338028, Blast_Score=357, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006194
- InterPro:   IPR002310 [H]

Pfam domain/function: PF02091 tRNA-synt_2e [H]

EC number: =6.1.1.14 [H]

Molecular weight: Translated: 34533; Mature: 34533

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFSSLLLKLQEYWKNQGCLVIQPYDIPAGAGTFHPATLLRSLDKKPWNVAYVAPSRRP
CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCC
TDGRYGENPNRLGSYYQFQVVIKPSPSNIQELYLKSLEVLGINLKEHDIRFVEDNWESPT
CCCCCCCCHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
LGAWGLGWEVWLDGMEVTQFTYFQQVGGIACNPIPVEITYGLERLAMYVQKVENILEIEW
CCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHEEEE
AKKNHDSVNYAQVHLESEYEFSKYHFEIASVKRLLEMFKNAQAEALHCLENKLPLPAYDF
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH
VMLCSHFFNILDARKAISVAERQNYILQIRDLTKGCAILYKEQEEEREERLKNALTKA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDFSSLLLKLQEYWKNQGCLVIQPYDIPAGAGTFHPATLLRSLDKKPWNVAYVAPSRRP
CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCC
TDGRYGENPNRLGSYYQFQVVIKPSPSNIQELYLKSLEVLGINLKEHDIRFVEDNWESPT
CCCCCCCCHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
LGAWGLGWEVWLDGMEVTQFTYFQQVGGIACNPIPVEITYGLERLAMYVQKVENILEIEW
CCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHEEEE
AKKNHDSVNYAQVHLESEYEFSKYHFEIASVKRLLEMFKNAQAEALHCLENKLPLPAYDF
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH
VMLCSHFFNILDARKAISVAERQNYILQIRDLTKGCAILYKEQEEEREERLKNALTKA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]