| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is surE
Identifier: 188527753
GI number: 188527753
Start: 973939
End: 974742
Strand: Direct
Name: surE
Synonym: HPSH_04900
Alternate gene names: 188527753
Gene position: 973939-974742 (Clockwise)
Preceding gene: 188527752
Following gene: 188527754
Centisome position: 60.55
GC content: 40.55
Gene sequence:
>804_bases ATGAAAAAAATTTTACTCACCAACGATGATGGCTACCATGCAAAAGGCATTAAAGCTTTAGAACAAGCTTTAGAAAAAAT GGCAGAAATTTATGTGGTCGCCCCCAAGCATGAAAAAAGCGCATGCTCGCAATGCATCACCATCACTGCGCCTTTAAGAG CGGAGAAAATTAAGGGCAAAGAAGGCAGGCATTATAAGATTGATGATGGCACGCCAAGCGATTGCGTGTATTTAGCGATC AATGAGCTTTTTAAACATGTTTGTTTTGATTTAGTGATTTCAGGGATCAATCTTGGATCCAACATGGGCGAAGACACGAT TTATTCTGGAACGGTGGCCGGAGCGATTGAAGGCACCATTCAGGGCGTGCCTTCCATTGCGATTTCTCAAATCCTTTCTC ATAGAAACAAAAACACGCCCCTAAGTTTTGATCTGGCTCAAAAGATTATCCAGGATTTAGTCCAAAACATTTTCACAAAC GGCTACCCTTTAAAAGGGCGCAAGCTTTTGAATGTGAATGTCCCTAATTGCTCCTTACAAGAATATAAGGGCGAATGCAT CACCCCTAAGGGCTATAGGTTGTATAAAAAAGAAGTGCATAAGCGCACAGACCCCAAAAATGAAAGCTATTTTTGGCTAG GGTTACACCCTTTAGAATGGCAAAAGCGCGAAAATGAAGACAGACTCTCTGATTTTGACGCTATTGCTTCAAACCATGTC TCTATCACGCCTTTAAATTTAGACTTAACCAGTTATGATGATTTGAAAAATTTGGAATCTTGGCATAAGGGAATGTTAAA GTGA
Upstream 100 bases:
>100_bases AAACAGAGGTTTTAGACGATTTAAACCTACTAAAACCCGCTTATCCTTTATTGCAAGAAAATTTGAACGCATTATTGAAC ACTCTATTTAAAGGTAAGAC
Downstream 100 bases:
>100_bases GTAAAAATCACCGCTTGGCTTTTTTAGGGCTAATTGTTGGGGTTCTATTCTTCTTTAGCGCATGCCAACACCGCTTGCAC ATGGGGTATTATTCAGAAGT
Product: stationary phase survival protein SurE
Products: NA
Alternate protein names: Nucleoside 5'-monophosphate phosphohydrolase [H]
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYKIDDGTPSDCVYLAI NELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTN GYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV SITPLNLDLTSYDDLKNLESWHKGMLK
Sequences:
>Translated_267_residues MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYKIDDGTPSDCVYLAI NELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTN GYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV SITPLNLDLTSYDDLKNLESWHKGMLK >Mature_267_residues MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYKIDDGTPSDCVYLAI NELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTN GYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV SITPLNLDLTSYDDLKNLESWHKGMLK
Specific function: Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates [H]
COG id: COG0496
COG function: function code R; Predicted acid phosphatase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surE nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1789101, Length=259, Percent_Identity=35.9073359073359, Blast_Score=162, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002828 [H]
Pfam domain/function: PF01975 SurE [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 30034; Mature: 30034
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGK CCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHEEEEECCCHHHHCCCC EGRHYKIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTI CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHH QGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQ CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHH EYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV HHCCCEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE SITPLNLDLTSYDDLKNLESWHKGMLK EEEEEEEECCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKKILLTNDDGYHAKGIKALEQALEKMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGK CCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHEEEEECCCHHHHCCCC EGRHYKIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTI CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHH QGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQ CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHH EYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHV HHCCCEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE SITPLNLDLTSYDDLKNLESWHKGMLK EEEEEEEECCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA