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The map label for this gene is 188527738

Identifier: 188527738

GI number: 188527738

Start: 947287

End: 948855

Strand: Direct

Name: 188527738

Synonym: HPSH_04805

Alternate gene names: NA

Gene position: 947287-948855 (Clockwise)

Preceding gene: 188527737

Following gene: 188527739

Centisome position: 58.89

GC content: 44.87

Gene sequence:

>1569_bases
TTGATAAGGAAAATCATGATAAAGAAAAATAGAACGCTGTTTCTTAGTCTAGCCCTTTGCGCTAGCATAAGTTATGCCGA
AGATGATGGAGGGTTTTTCACCGTCGGTTATCAGCTCGGGCAAGTCATGCAAGATGTCCAAAACCCAGGCGGCACTAAAA
GAGACGAACTCGCAAGAGAGCTTAACGCTGATGTAACGAACAACATTTTAAACAACAACACCGGAGGCAATGTCGCAGGG
GCGTTGAGTAACGCTTTCTCCCAATACCTTTATTCGCTTTTAGGGGCGTATCCAAAGAAACTCAATGGTAACGATGTGTC
TGCGAACGCTCTTTTAGGGGGTACGGTAGGCCGTGGGACTTGCGCGGCTGCAGGGACGGCTGGTAGCAATTCTCTTAACA
CTCAAAGCGCTTGCACCGCTGCGGGCTATTATTGGCTCCCTAGCCTTTCTGATAGGGTTTTAAGCACGATCGGCAGCCAG
ACTAACTATGGCACGAACACCAATTTCCCCAACATGCAACAACAGCTCACCTACTTGAATGCGGCGAATGTGTTTTTTAA
TGCGATGAATAAGGCTTTAGAGAAAAATGGAACTAGTGGAACTAGTGGAACTAGTGGTGCGACTGGTCAAAATGGTCAAA
CTTACTCTACACAAGCTATTCAATACCTTCAAAGCCAACAAAATATTCTCAATAACGCAGCTAATTTGCTCAAGCAAGAT
GAATTGCTTTTAGAAGCTTTCAACTCTGCCGTAGCTGCTAACATTGGGAATAAGGAATTCAATTCAGCCGTTTTTACAGG
TTTGGTGCAAGGCATTATTGATCAATCTCAAAAAGTTTATAACGAACTCAATACAAACCCCATTAGCGGGAGCACGGTTA
ATAGCACTGGGATAGATAGCAACCAAGCTAACGCTGTGCAAGGGCGCGCTAATCAGCTCTCTAACGCTCTTTATAACGCG
CAAGTAACTTTGGATAAAATCAATGCGCTCAACAATCAGGTTAGGAGCATGCCTTACTTGCCCCAATTCAGGGCCGGGAA
CAGCCGTGCGACGAATATCATGAACGGGTTTTACACTAAAGTGGGCTATAAGCAATTCTTCGGGAAGAAAAGGAATATCG
GTTTGCGCTATTATGGTTTCTTTTCTTATAACGGAGCGAGCGTGGGCTTTAGATCCACTCAAAATAATGTAGGGTTATAC
ACTTATGGGGTGGGGACTGATGTGTTGTATAACATCTTTAGCCGCTCCTATCAAAACCGCTCTGTGGATATGGGCTTTTT
TAGCGGTATCCAATTAGCCGGTGAGACCGTCCAATCCACGCTCAGAGATGACCCCAATGTGAAATTGCATGGGAAAGTCA
ATAACACGCACTTCCAGTTCCTCTTTGACTTCGGTATGCGGATGAACTTCGGTAAGTTGGACGGGAAATCCAACCGCCAC
AACCAGCACACGGTGGAATTTGGCGTAGTGGTGCCTACGATTTATAACACTTATTACAAATCAGCAGGGACTACCGTGAA
GTATTTCCGTCCTTATAGCGTTTATTGGTCTTATGGGTATTCATTCTAA

Upstream 100 bases:

>100_bases
TGTGAAAATATCACAATTACATCTGACAATTTGTATTACTGAATATTATTTACTGATGTAACTTAAATCCCAAATTTAAA
CTCAATCAAGGAGCATCCCA

Downstream 100 bases:

>100_bases
GAAAGGGGGGATCAGACAAATATGAAACAAAATTTAAAGCCATTCAAAATGATTAAGGAAAATTTAATGACACAATCTCA
AAAAGTAAGATTCTTAGCCC

Product: outer membrane protein HopC

Products: NA

Alternate protein names: Outer Membrane Protein HopQ; Outer Membrane Protein HorA; Outer Membrane Protein HopZ; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein Adhesin; Outer Membrane Function; Adhesin; Outer Membrane Protein HopB; Outer Membrane Protein HorB; Outer Membrane Protein HopG; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein HopD; Outer Membrane Protein HorF; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HopF

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MIRKIMIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAG
ALSNAFSQYLYSLLGAYPKKLNGNDVSANALLGGTVGRGTCAAAGTAGSNSLNTQSACTAAGYYWLPSLSDRVLSTIGSQ
TNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALEKNGTSGTSGTSGATGQNGQTYSTQAIQYLQSQQNILNNAANLLKQD
ELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQKVYNELNTNPISGSTVNSTGIDSNQANAVQGRANQLSNALYNA
QVTLDKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLY
TYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRH
NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF

Sequences:

>Translated_522_residues
MIRKIMIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAG
ALSNAFSQYLYSLLGAYPKKLNGNDVSANALLGGTVGRGTCAAAGTAGSNSLNTQSACTAAGYYWLPSLSDRVLSTIGSQ
TNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALEKNGTSGTSGTSGATGQNGQTYSTQAIQYLQSQQNILNNAANLLKQD
ELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQKVYNELNTNPISGSTVNSTGIDSNQANAVQGRANQLSNALYNA
QVTLDKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLY
TYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRH
NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>Mature_522_residues
MIRKIMIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAG
ALSNAFSQYLYSLLGAYPKKLNGNDVSANALLGGTVGRGTCAAAGTAGSNSLNTQSACTAAGYYWLPSLSDRVLSTIGSQ
TNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALEKNGTSGTSGTSGATGQNGQTYSTQAIQYLQSQQNILNNAANLLKQD
ELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQKVYNELNTNPISGSTVNSTGIDSNQANAVQGRANQLSNALYNA
QVTLDKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLY
TYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRH
NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56974; Mature: 56974

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKIMIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARE
CCCEEEEECCCEEEEEEHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHH
LNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPKKLNGNDVSANALLGGTVGRGT
HCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCC
CAAAGTAGSNSLNTQSACTAAGYYWLPSLSDRVLSTIGSQTNYGTNTNFPNMQQQLTYLN
EEECCCCCCCCCCCCHHHHHCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
AANVFFNAMNKALEKNGTSGTSGTSGATGQNGQTYSTQAIQYLQSQQNILNNAANLLKQD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQKVYNELNTNPISGSTVNSTGIDS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
NQANAVQGRANQLSNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTK
CCCHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
VGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNR
HHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC
SVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRH
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
CCEEEEEEEEHHHHHHHHHHCCCCEEEEECCEEEEEECCCCC
>Mature Secondary Structure
MIRKIMIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARE
CCCEEEEECCCEEEEEEHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHH
LNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPKKLNGNDVSANALLGGTVGRGT
HCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCC
CAAAGTAGSNSLNTQSACTAAGYYWLPSLSDRVLSTIGSQTNYGTNTNFPNMQQQLTYLN
EEECCCCCCCCCCCCHHHHHCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
AANVFFNAMNKALEKNGTSGTSGTSGATGQNGQTYSTQAIQYLQSQQNILNNAANLLKQD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQKVYNELNTNPISGSTVNSTGIDS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
NQANAVQGRANQLSNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTK
CCCHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
VGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNR
HHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC
SVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRH
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
CCEEEEEEEEHHHHHHHHHHCCCCEEEEECCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA