| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188527720
Identifier: 188527720
GI number: 188527720
Start: 929094
End: 929471
Strand: Reverse
Name: 188527720
Synonym: HPSH_04710
Alternate gene names: NA
Gene position: 929471-929094 (Counterclockwise)
Preceding gene: 188527721
Following gene: 188527719
Centisome position: 57.78
GC content: 33.6
Gene sequence:
>378_bases ATGCCTAACTCTCCCACCAAAAAAGACTGCACGCAATACAGCGAAAAACAGCTTTTTAATTTAATCAATCAATTAGAGCG AAAAATCAAAAAGATGCAAAATGATAGAGCTTCTTTTAAAGAAAAAATGGCTAAAGAATTGGAAAAAAGGGATCAAAACT TTAAGGATAAAATAGACGCATTAAATGAACTCTTGCAAAAAATCAGCCAAGCTTTTAATAATAAAAGAGATTGTTGTTTG GGGCATGAGATCCCAAACCTTGAAACGCAACAAGCCATGAGAGATGCACTCAACAAAGAAACCGATTTGATTGTTGAAGA TTTTTCTAGTTATAGCGATGAGAGAAAAAGGGCTTTGGGTGTTAAAACTCAATCTTAA
Upstream 100 bases:
>100_bases CTCAAAAGCGCTTTTTAATCTTTAAGTTTTTATTTTCCTAATCTTTCTCGCTCTATCGCTTGCGCTATAATGAGCTGGTA TTTTTAAAAAAGGATAAAGC
Downstream 100 bases:
>100_bases AAAATCTTTTCAAAAAGATTTTGATAAATTGCTTTTGAATGGGTTTGATGATAGCGTTTTGAACAAGGTCATTCTGTCTT TGAGAAAAAAAGAACCGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MPNSPTKKDCTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFNNKRDCCL GHEIPNLETQQAMRDALNKETDLIVEDFSSYSDERKRALGVKTQS
Sequences:
>Translated_125_residues MPNSPTKKDCTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFNNKRDCCL GHEIPNLETQQAMRDALNKETDLIVEDFSSYSDERKRALGVKTQS >Mature_124_residues PNSPTKKDCTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFNNKRDCCLG HEIPNLETQQAMRDALNKETDLIVEDFSSYSDERKRALGVKTQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14658; Mature: 14527
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNSPTKKDCTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH LNELLQKISQAFNNKRDCCLGHEIPNLETQQAMRDALNKETDLIVEDFSSYSDERKRALG HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC VKTQS CCCCC >Mature Secondary Structure PNSPTKKDCTQYSEKQLFNLINQLERKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH LNELLQKISQAFNNKRDCCLGHEIPNLETQQAMRDALNKETDLIVEDFSSYSDERKRALG HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC VKTQS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA