Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527710

Identifier: 188527710

GI number: 188527710

Start: 916302

End: 918146

Strand: Reverse

Name: 188527710

Synonym: HPSH_04660

Alternate gene names: NA

Gene position: 918146-916302 (Counterclockwise)

Preceding gene: 188527714

Following gene: 188527709

Centisome position: 57.08

GC content: 37.56

Gene sequence:

>1845_bases
ATGAGCTTGGAGCATTTTGCCCCTATAAAAGTTGAGCGGTGCAAAGACATTCAAAAAGAATTAAAAAAAGCGGCCGCTGA
AAATAGATTGCAAACAGAAGATCTATGGTTTGAGATTTTAAAAACTTCTATTTTTATCAAAAACAGCGCTAAAGACGATT
TCAGCGAGGCTTTTGGTGGGGAATTGCAACAATTAGAAGAAGATGAATACTATGAAAAAAAAGAGCTAACCCTTTATCAA
ACCCACGACATTAAAATCAAATCAAACGCTTATAAGCGCTTTTTTGAAGTGGAAGTGGATGAACATTTGAGTAAAATAGA
AATCGTTTTAGACGAGTGTTTTATTGTCCTAGACACTGAAGAGCATTACCAAGAAATGTTTGCGTATATTAAAGAGTGTT
TAGCCTTTGAAGGCGTGGTGTTTCGCCACCTTTCACAAATGTATGAAAATTTAAAAACAGAGTTAAGAAAATATAAAAAA
GAAGCCCAAAATAAGCACTTTATTTTATACGCTTCTTCAACCTTTATCCCTAATACAGAAGAACAATCCCATTTTTTATT
AGAAGAAGAATACCTTCCAACGCATATTATTCCTTTAAGCGATCAAGAAGAATCGTTTGTTAAAGAAAATGATTATATCG
CTAAAGAAAATCAAAAAGTCGCTTGCGTGAATTACCCCAAACAAGGCAAAGACGGCCGTAACCTTAAGGGTCTTTATATT
GAATTGCCTAAAGTTGCCAATTCGCCCACCCCTATAGGGCATGACAAAAACGCTTTTGAAGAAAGAGAAGAAAATAACGC
TTTAGTGTATTACTCCAAAGCCTTACAAGGGGTTAAAATGGAAAAAGGGCGTTTGGTTTCTAAGCAAAATTTTATTTTTA
AAAACGGGATCAAATCCATTGAAACGCCCAATCTTTTAGGGGGGGTGGAGAGCGGGTTGGTTTTAGAAATTCAAGCTAAA
GATGAATTGAGCGATGCGATTGATTCTAACCTCATTTTAGAAGCGAGCGCGATTAACATTAAGGGCAATGTGGGCAAGAA
TGTGATCTTAGTGGCTAAAGAAATTACTATAGAGGGGCAAATCCACCCTGAAGGCTATGTTTATGCCAATAAAGCGCGTA
TCACTAACCATAAGGGCGTGTGCTACGCTAAAGAGTTTGAGTGCAAGTATTTAGAGCGCGCTAAGGTGTATGCCAATAGC
GTTAAAGTGGAAGCGAGCGCAGGGAGCGTGGTCTATGCGAAAGAAATAGCTTTAGAAAAGCTCAAAAGCGATAACAAGCT
GTATTTTTCCAAGCAATGTTTGATTGATGAAGTGGATGGCAATGGCAACCGCTTTATTTTTTACGCTTTTGGGGGGCGAG
AAAACCAAGAGGAATTGAAAGCCGCTAAACAAAAACTCAATGCGTTAGGGTTAAAATCCAAAAAAATCATCGCTCAGCAC
CAGTCCTTAAACCATTTAGTCAAAAACCATCAAGCCATCATGGAAAAGTTTAAAAACGCTACCGAAGAAATCAAACGCTC
TTTAATGCAACAAGAAAGCGTGAAAGACGCTTATAGCGAGTTTGTGTTTGCCTTAAAGCGTTTGAAAATCTTAAAAGCCC
AAATGCTAGAATTGCAAAAAATCAATAACGAATGCTACGCTAAACTCATTAGCATAGAAAACAGCTTCCAGCATGCAAGC
GTTATGACTAAAAACCCTTTCAAGCAAGAAAATATCGTGATCTACCATCGCAATTACCCTAAAGTGAGCAACTTGAGCGC
TATGTTAAGCCATAATGAAAGCGTGAATGTGATCTATGAAGATCATAAAATCAAAAAAGTCCCTAAAAGCGCCATAAAAG
GCTAG

Upstream 100 bases:

>100_bases
TTTAGCATACTAGTTGTATTTATTACCTAATTTTTAGCGTTTTTTTGTTAGCATATTCCTTTTTTCAAATTCTTATATTA
TACCATTTAAGGATTAAAAA

Downstream 100 bases:

>100_bases
AGCGAGAAATAAAAAAGGGATAAAATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATAT
AGAAGTGCAAGGGGTTGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 614; Mature: 613

Protein sequence:

>614_residues
MSLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQ
THDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKK
EAQNKHFILYASSTFIPNTEEQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI
ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSIETPNLLGGVESGLVLEIQAK
DELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANS
VKVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH
QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHAS
VMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYEDHKIKKVPKSAIKG

Sequences:

>Translated_614_residues
MSLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQ
THDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKK
EAQNKHFILYASSTFIPNTEEQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI
ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSIETPNLLGGVESGLVLEIQAK
DELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANS
VKVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH
QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHAS
VMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYEDHKIKKVPKSAIKG
>Mature_613_residues
SLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQT
HDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKKE
AQNKHFILYASSTFIPNTEEQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYIE
LPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSIETPNLLGGVESGLVLEIQAKD
ELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANSV
KVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQHQ
SLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQKINNECYAKLISIENSFQHASV
MTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYEDHKIKKVPKSAIKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70614; Mature: 70482

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGG
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHCC
ELQQLEEDEYYEKKELTLYQTHDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTE
HHHHCCHHHHHCCCCEEEEEEEEEEECCCHHHHEEEEEHHHHHHHHHHEEECEEEEEECH
EHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKKEAQNKHFILYASSTFIPNTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
EQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI
CCCCEEEECCCCCEEEEECCCCHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCEEEE
ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSI
ECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEHHHHCCCCCCCCCEECCCCCHHHCCCCCC
ETPNLLGGVESGLVLEIQAKDELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQ
CCCCHHCCCCCCEEEEEECCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEE
IHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKEIALEK
ECCCCEEEECCEEEECCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHH
LKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH
HCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INNECYAKLISIENSFQHASVMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYE
HCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE
DHKIKKVPKSAIKG
CCHHHHCCHHHCCC
>Mature Secondary Structure 
SLEHFAPIKVERCKDIQKELKKAAAENRLQTEDLWFEILKTSIFIKNSAKDDFSEAFGG
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCCHHHHHHCC
ELQQLEEDEYYEKKELTLYQTHDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTE
HHHHCCHHHHHCCCCEEEEEEEEEEECCCHHHHEEEEEHHHHHHHHHHEEECEEEEEECH
EHYQEMFAYIKECLAFEGVVFRHLSQMYENLKTELRKYKKEAQNKHFILYASSTFIPNTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
EQSHFLLEEEYLPTHIIPLSDQEESFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYI
CCCCEEEECCCCCEEEEECCCCHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCEEEE
ELPKVANSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSKQNFIFKNGIKSI
ECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEHHHHCCCCCCCCCEECCCCCHHHCCCCCC
ETPNLLGGVESGLVLEIQAKDELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQ
CCCCHHCCCCCCEEEEEECCHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEEE
IHPEGYVYANKARITNHKGVCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKEIALEK
ECCCCEEEECCEEEECCCCEEEEECCCHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHH
LKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQH
HCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
QSLNHLVKNHQAIMEKFKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INNECYAKLISIENSFQHASVMTKNPFKQENIVIYHRNYPKVSNLSAMLSHNESVNVIYE
HCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEE
DHKIKKVPKSAIKG
CCHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA