Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527645

Identifier: 188527645

GI number: 188527645

Start: 845992

End: 846984

Strand: Reverse

Name: 188527645

Synonym: HPSH_04335

Alternate gene names: NA

Gene position: 846984-845992 (Counterclockwise)

Preceding gene: 188527646

Following gene: 188527643

Centisome position: 52.66

GC content: 38.07

Gene sequence:

>993_bases
TTGAAAAAAATATTACCGGCTCTGTTAATGGGGTTTGTAGGATTGAATGCTGATGAGCGTTTGTTAGAAATTATGCGCCT
TTATCAAAAGCAAGGCTTGGAAGTGGTGGGTCAAAAGCTGGATTCTTACTTAGCGGATAAATCTTTTTGGTTAGAAGAGC
TTCAAAATAAGGACACAGATTTTGGCTATTATCAAAACAAGCAGTTTTTATTTGTGGCGGATAAATCCAAGCCAAGTTTA
GAGTTTTATGAAATAGAAAGCAACATGCTTAAAAAAATCAACAGCTCTAAAGCCCTTGTAGGCTCTAAAAAGGGCGATAA
AACTTTAGAGGGCGATTTGGCAACGCCTATTGGAGTGTATCGTATCACGCAGAAATTAGAGCGCTTGGATCAATATTATG
GCGTTTTAGCTTTTGTAACGAATTACCCTAATTTGTATGACACCTTGAAAAAACGCACCGGGCATGGCATTTGGGTGCAT
GGAATGCCTTTAAATGGCGATCGGAATGAATTGAACACCAAGGGCTGCATTGCGATTGAAAACCCGCTTTTAAGCTCTTA
TGATAAAGTGTTAAAAGGCGAAAAAGCGTTCCTTATCACCTATGAAGACAAGTTTTTCCCCAGCACTAAAGAAGAATTGA
GCATGGTTTTAAGCTCCCTTTTCCAATGGAAAGAAGCCTGGGCTAGGGGCGATTTTGAACGCTACATGCGTTTTTATAAC
CCCAATTTCACTCGCTATGACGGCATGAAATTCAACGCTTTTAAAGAGTATAAAAAAAGGGTGTTTGCGAAAAACGAAAA
AAAGAATATCGCTTTTTCTTCTATTAGCGTGATCCCTTACCCCAACTCCCAGAACAAACGCTTGTTTTATGTGGTGTTTG
ACCAAGATTACAAAGCTTATCAGCAAAACAAACTCTCTTATAGCTCTAATTCTCAAAAAGAACTCTATGTAGAGATTGAA
AACAATCAAGTGTCTATTATAATGGAAAAATAG

Upstream 100 bases:

>100_bases
AAAAGGTTTTTTTAAACTTGCAAGTGATCGCTCAAAAATCATGGAGCAAGGAAGAAAAGAGCTTGCAAAAACTGGGTTAT
ATCTATCAAAGGAATAGGGA

Downstream 100 bases:

>100_bases
GGCTTTGTTTTAATGAGAGCGATTTAAGCGGATTTTTCTAATCTTAAAGCTTGGTTACAAGCTTGATTAAAAAACTACAG
AGCTTCCATAGCTTTTTCAT

Product: conserved hypothetical secreted protein

Products: NA

Alternate protein names: ErfK/YbiS/YcfS/YnhG; Periplasmic Protein; Erfk/Ybis/Ycfs/Ynhg Family Protein; 60 KDa Chaperonin (Protein Cpn; TPR Repeat-Containing Protein; ErfK Family Protein

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKKILPALLMGFVGLNADERLLEIMRLYQKQGLEVVGQKLDSYLADKSFWLEELQNKDTDFGYYQNKQFLFVADKSKPSL
EFYEIESNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH
GMPLNGDRNELNTKGCIAIENPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMVLSSLFQWKEAWARGDFERYMRFYN
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSISVIPYPNSQNKRLFYVVFDQDYKAYQQNKLSYSSNSQKELYVEIE
NNQVSIIMEK

Sequences:

>Translated_330_residues
MKKILPALLMGFVGLNADERLLEIMRLYQKQGLEVVGQKLDSYLADKSFWLEELQNKDTDFGYYQNKQFLFVADKSKPSL
EFYEIESNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH
GMPLNGDRNELNTKGCIAIENPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMVLSSLFQWKEAWARGDFERYMRFYN
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSISVIPYPNSQNKRLFYVVFDQDYKAYQQNKLSYSSNSQKELYVEIE
NNQVSIIMEK
>Mature_330_residues
MKKILPALLMGFVGLNADERLLEIMRLYQKQGLEVVGQKLDSYLADKSFWLEELQNKDTDFGYYQNKQFLFVADKSKPSL
EFYEIESNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH
GMPLNGDRNELNTKGCIAIENPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMVLSSLFQWKEAWARGDFERYMRFYN
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSISVIPYPNSQNKRLFYVVFDQDYKAYQQNKLSYSSNSQKELYVEIE
NNQVSIIMEK

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38595; Mature: 38595

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILPALLMGFVGLNADERLLEIMRLYQKQGLEVVGQKLDSYLADKSFWLEELQNKDTD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FGYYQNKQFLFVADKSKPSLEFYEIESNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY
CCEECCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHH
RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEC
NPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMVLSSLFQWKEAWARGDFERYMRFYN
CCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSISVIPYPNSQNKRLFYVVFDQDYKAY
CCCCEECCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCHHHH
QQNKLSYSSNSQKELYVEIENNQVSIIMEK
HHCCCCCCCCCCEEEEEEEECCEEEEEEEC
>Mature Secondary Structure
MKKILPALLMGFVGLNADERLLEIMRLYQKQGLEVVGQKLDSYLADKSFWLEELQNKDTD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FGYYQNKQFLFVADKSKPSLEFYEIESNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY
CCEECCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHH
RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEC
NPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMVLSSLFQWKEAWARGDFERYMRFYN
CCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSISVIPYPNSQNKRLFYVVFDQDYKAY
CCCCEECCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCHHHH
QQNKLSYSSNSQKELYVEIENNQVSIIMEK
HHCCCCCCCCCCEEEEEEEECCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA