Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527590

Identifier: 188527590

GI number: 188527590

Start: 791682

End: 792932

Strand: Direct

Name: 188527590

Synonym: HPSH_04060

Alternate gene names: NA

Gene position: 791682-792932 (Clockwise)

Preceding gene: 188527588

Following gene: 188527591

Centisome position: 49.22

GC content: 38.85

Gene sequence:

>1251_bases
GTGGCAATAAACACCTTTTTAAAACATTCTTTTCTGGTCTGTTTGTTAGCGGTTAATTCTTACGCTTTTGATTGGAATAT
TTTTAAATACAATTTGGGTTTCAATATGTTTATCATGGACCATGAAGGCTCAACGCCTTATTGGGTCAATACTAACACCA
ATCTTAAAACCCGTTTGACTCCAAATTTTGGGATCCAATTTTATACAAAAGGTGTGGAGCAAAGCCTTACTGTGGGGGCG
TATTTTTTTCAAAACTTCCATAACTACAGCACTAATTTTCCCTACCGCTGGGGGCCTACTATGTATTATAAGGCTAGGGG
GAAGCGTTTTACTTTTTATGGTGGGATTTTTCCCAGGAAAAACCTCTTAGGAAGGTATGGTTTGAATATTTTTGCCCCTT
ATTATTGGTTTATAGATCCAAACGCTAGAGGGTTTTTATTGCAATTTCAAAACCATTATTCGCCTTCAAAACCCTATTAT
GGGCACGCAGAGTTCATGCTAGATTGGTTTGGAGGCAATTGTTACAACACTTGTAAATTCGGGAGAAACCCCTATGGGAA
CGCAATGGACAGGTTTCAAATGAACGGCTCTGTCGCTTATAATTTCTTTAAGGATTTATTGGGTATTGGAGGGTATTTTG
TCTTGTTCCATAACGAAGACAAATACCTTTTGAATGGGGCTGATGGCATGCAGTTTAATGAAAAAAAAGCGATTGACAAC
AATAATATTTATCTTATGGATCGCCTCTACTTTAACGCTTACATAGGGACAAGCCTTTTAGACATCGCCCCCTTTATGGA
AAAACTCAACGCCAGTTTTGGTATGGTTTCTGAATCAAGCCGATTAAGGCAAATTCATAAAAATGTGCCTTTTATGAACA
GCGTGGGGGGGCAATTGGATGTGGAGATCCAATACAAAGGCTTTGGAATACACAATTTATTTTTCTTCGCCAAGACCCCA
GAGATGCCTTTTTATAACCAATACCAGTATGTTGAAATGTATTGCACGCCTTCTTATTGCCCCACGCCTATTTATCGCGG
CGTGCCATTCTTTCAAGCCAACATGTATAATCGTTTTGATTTGTATTACAATTGGAAAAACGACTTCGCATCGGTTCGCA
TCAACTTCGTGCTTAATGCGATGCGTGGGGGCTTTGATAGGAGCTTGCCTTGGTCAGAATCTTATCAAGTGTATATGACG
GTTGCCTTTGATCCCTACAACCTTATTAACAAAATTGCTAGAAAAAAATAA

Upstream 100 bases:

>100_bases
ATATTAAATCTAAAGAAAAATATTTTTAGATGTGCTAGAATACCCATTTGTTACAAGATAAGCTTTTTTATCAAAAATAA
TGATGACATAGGGGTAACAA

Downstream 100 bases:

>100_bases
AAATTCTTGACAATCGGTTAATCTGTCTTATATAATATTATTTCATTTGTAGCCATTGTTTGAGCAATGATTTTAAGCTA
TGGAAAAGAGGTGATAGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTKGVEQSLTVGA
YFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYY
GHAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN
NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLDVEIQYKGFGIHNLFFFAKTP
EMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFDLYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMT
VAFDPYNLINKIARKK

Sequences:

>Translated_416_residues
MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTKGVEQSLTVGA
YFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYY
GHAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN
NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLDVEIQYKGFGIHNLFFFAKTP
EMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFDLYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMT
VAFDPYNLINKIARKK
>Mature_415_residues
AINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLTPNFGIQFYTKGVEQSLTVGAY
FFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRKNLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYG
HAEFMLDWFGGNCYNTCKFGRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDNN
NIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLDVEIQYKGFGIHNLFFFAKTPE
MPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFDLYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTV
AFDPYNLINKIARKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49006; Mature: 48875

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT
CCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCCCEEEECCCCEEEEEC
PNFGIQFYTKGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK
CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCH
NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF
HHHHHCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEECCC
GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN
CCCCCCCCHHHEECCCCCHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC
NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLD
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEE
VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD
EEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHCCCCEEECCCCEEEE
LYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK
EEEECCCCCEEEEEEEEEEHHHCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCC
>Mature Secondary Structure 
AINTFLKHSFLVCLLAVNSYAFDWNIFKYNLGFNMFIMDHEGSTPYWVNTNTNLKTRLT
CCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCCCEEEECCCCEEEEEC
PNFGIQFYTKGVEQSLTVGAYFFQNFHNYSTNFPYRWGPTMYYKARGKRFTFYGGIFPRK
CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCH
NLLGRYGLNIFAPYYWFIDPNARGFLLQFQNHYSPSKPYYGHAEFMLDWFGGNCYNTCKF
HHHHHCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEECCC
GRNPYGNAMDRFQMNGSVAYNFFKDLLGIGGYFVLFHNEDKYLLNGADGMQFNEKKAIDN
CCCCCCCCHHHEECCCCCHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC
NNIYLMDRLYFNAYIGTSLLDIAPFMEKLNASFGMVSESSRLRQIHKNVPFMNSVGGQLD
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEE
VEIQYKGFGIHNLFFFAKTPEMPFYNQYQYVEMYCTPSYCPTPIYRGVPFFQANMYNRFD
EEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHCCCCEEECCCCEEEE
LYYNWKNDFASVRINFVLNAMRGGFDRSLPWSESYQVYMTVAFDPYNLINKIARKK
EEEECCCCCEEEEEEEEEEHHHCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA