Click here to switch to the map view.

The map label for this gene is 188527360

Identifier: 188527360

GI number: 188527360

Start: 540796

End: 541632

Strand: Direct

Name: 188527360

Synonym: HPSH_02835

Alternate gene names: NA

Gene position: 540796-541632 (Clockwise)

Preceding gene: 188527359

Following gene: 188527361

Centisome position: 33.62

GC content: 36.56

Gene sequence:

>837_bases
TTGAACAAACTGCTTAAAAAGGGGTTTTTAGCGTTCTTTTTGAGCGTGTATTTAAGGGCTGATGATCTGGTTACTTACAC
AATCACCAAAGAAGAAGATCTAGGATACCAGCGGTTTTTAGCAAAGAAGTGTTTAAGGGGTAAAACCCATTCTCCATGTT
TCACTGAGCCTAAAAAGCCCAATAAAAAACTTTTTAACATAGACAAAAGTTCCCATTATTATGGCACAAGCGTGGTGCAA
ATGTCATGGCTACAGAGTAGGGAAAAATTTGAAAACCATTCAAAATACCGAGACATTCCTTTTGCTGAAGTCAGTTTGAT
TTATGGTTATAAACAATTTTTTCCTAAAAAAGAGCGCTATGGTTTCCGTTTTTATATTTCTTTGGATTATGCCTATGGTT
TTTTTCTTAAAAATAAAGGCGTATTGGGCGATAGTTTGAGGGAGAGTTCGCAAATCCCTAAAAGCTATAGGGAAAAATTG
CAAAGAAAAGAGACTTTTATTAACGCTATTTTTTATGGCGTGGGAGCTGACTTTTTATACAAACGCGCTTTTGGAACGCT
GATTTTAGGGATGAATCTCGTGGGAGAAACCTGGTTTTATGAAACAAGGATTTTTAAAAAGTGGGCTAAAGATCCTTCAA
GCGTTTATCACCCTTACATGTTTCAAGTGATGTTGAATGTGGGGTATCGTTACCGCTTTTCAAGGTATAAGAATTGGGCG
ATAGAATTGGGCGCGCGTATCCCCTTTTTAACCAATGATTATTTTAAAACCCCTTTATACACCCTTCATTTCAGGCGCAA
TATTTCTGTCTATCTCACTTCAACTTATGATTTTTAG

Upstream 100 bases:

>100_bases
AAAAAACTCACTCAAAAGAATTTAGAATCTTATCAAAAAGACGCCAAGGAATTGAAAAACAAGAGAAACCGATAAAAACA
AAATACACACAAGAGAACGC

Downstream 100 bases:

>100_bases
TTTTTTAAATTTTTGAAAACTAGAATTAAAACCGCTTTTTATAAACCGGAATTAAAACAAATTAAGCTATAATGATACAA
AAATTTAATTTTTTAACCAT

Product: outer membrane protein (omp18)

Products: NA

Alternate protein names: Outer Membrane Protein HorG

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNKLLKKGFLAFFLSVYLRADDLVTYTITKEEDLGYQRFLAKKCLRGKTHSPCFTEPKKPNKKLFNIDKSSHYYGTSVVQ
MSWLQSREKFENHSKYRDIPFAEVSLIYGYKQFFPKKERYGFRFYISLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKL
QRKETFINAIFYGVGADFLYKRAFGTLILGMNLVGETWFYETRIFKKWAKDPSSVYHPYMFQVMLNVGYRYRFSRYKNWA
IELGARIPFLTNDYFKTPLYTLHFRRNISVYLTSTYDF

Sequences:

>Translated_278_residues
MNKLLKKGFLAFFLSVYLRADDLVTYTITKEEDLGYQRFLAKKCLRGKTHSPCFTEPKKPNKKLFNIDKSSHYYGTSVVQ
MSWLQSREKFENHSKYRDIPFAEVSLIYGYKQFFPKKERYGFRFYISLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKL
QRKETFINAIFYGVGADFLYKRAFGTLILGMNLVGETWFYETRIFKKWAKDPSSVYHPYMFQVMLNVGYRYRFSRYKNWA
IELGARIPFLTNDYFKTPLYTLHFRRNISVYLTSTYDF
>Mature_278_residues
MNKLLKKGFLAFFLSVYLRADDLVTYTITKEEDLGYQRFLAKKCLRGKTHSPCFTEPKKPNKKLFNIDKSSHYYGTSVVQ
MSWLQSREKFENHSKYRDIPFAEVSLIYGYKQFFPKKERYGFRFYISLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKL
QRKETFINAIFYGVGADFLYKRAFGTLILGMNLVGETWFYETRIFKKWAKDPSSVYHPYMFQVMLNVGYRYRFSRYKNWA
IELGARIPFLTNDYFKTPLYTLHFRRNISVYLTSTYDF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33267; Mature: 33267

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLLKKGFLAFFLSVYLRADDLVTYTITKEEDLGYQRFLAKKCLRGKTHSPCFTEPKKP
CCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
NKKLFNIDKSSHYYGTSVVQMSWLQSREKFENHSKYRDIPFAEVSLIYGYKQFFPKKERY
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC
GFRFYISLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKLQRKETFINAIFYGVGADFLY
CEEEEEEEECEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
KRAFGTLILGMNLVGETWFYETRIFKKWAKDPSSVYHPYMFQVMLNVGYRYRFSRYKNWA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHEEHHHHCCEE
IELGARIPFLTNDYFKTPLYTLHFRRNISVYLTSTYDF
EEECCCCCCEECCCCCCCEEEEEEECCEEEEEEEECCC
>Mature Secondary Structure
MNKLLKKGFLAFFLSVYLRADDLVTYTITKEEDLGYQRFLAKKCLRGKTHSPCFTEPKKP
CCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
NKKLFNIDKSSHYYGTSVVQMSWLQSREKFENHSKYRDIPFAEVSLIYGYKQFFPKKERY
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC
GFRFYISLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKLQRKETFINAIFYGVGADFLY
CEEEEEEEECEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
KRAFGTLILGMNLVGETWFYETRIFKKWAKDPSSVYHPYMFQVMLNVGYRYRFSRYKNWA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHEEHHHHCCEE
IELGARIPFLTNDYFKTPLYTLHFRRNISVYLTSTYDF
EEECCCCCCEECCCCCCCEEEEEEECCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA