| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527343
Identifier: 188527343
GI number: 188527343
Start: 530311
End: 531321
Strand: Direct
Name: 188527343
Synonym: HPSH_02750
Alternate gene names: NA
Gene position: 530311-531321 (Clockwise)
Preceding gene: 188527335
Following gene: 188527344
Centisome position: 32.97
GC content: 37.78
Gene sequence:
>1011_bases ATGCGTTCGTTTGGGAACTACATGCAAGAATGGCTTTATGGAGAAAAGGGGTATTACAAAAAAGCGCTAATCGGTCAAAA AGGGGATTTTTACACTTCGGTGTCTTTGAGTAAGTTTTTTGGGGGCGCTGTTGCGTTTTATATCGTCAAGCTTTTAGAAG AAGAAAAATTATTTTTGCCTTTAAAAATTGTAGAAATTGGCGCTCATCATGGGCATTTTTTGAGCGATATAGCGAATTTT TTAAACGCTTTGAGCGTGGGCGTAATGGAACAATGCGAGTTTGTCAGCTGCGAGCCTTTAAAGGAATTGCAAAAACTCCA ACGAACTATTTTTAAACAAGCCACGCAATTGGATTTGATGATCTGCGATCTGAAAGATCTAGATTTCAAGGGGAATGAAA GCGCGTTTGTTGTCTCTAATGAATTGTTTGACGCATTCGCTTGCGAGATCATTAAAGATAACAAAATGCTTTTTATTACC CATGATCATAAGGGCGTTTGGGGTGGTATTGATGAACCCACTAAAGAACTTCTTAAAAATTTGGATTTAAAACAAGGGTG CGCGCCGTTATTTTTAGAGGCTTTCATTAAGGATTTGTTAGAAAAATTGGATGAGGCTTCTTCTTGGGTGTTTTTGAGCT TTGATTATGGCGATGAAATAGAGAGGAAAGACATGCATTTAAGGGCTTTTAAAAACCACCAAGCGCTGGATTTTAAGGAT ATTTTAAACAATCTGGCTTCTTTGTATCAAAAGAGCGATCTGACCTATGATGTCAATTTTTCTCTGGTGCGCTTTTTGTT TGAAAAACACCATGCAAAATTTTCATTCTTCAAATCGCAGGCTAACGCTTTATTGGATATGGGACTTATGGAGTTATTAG AAACGTTTTCAAAGAGTGCGAGTTATGAAAGGTATTTGAAAGAAGCGGCTAAAATCAAGCCCCTAATTAGCCCTGGGGGC TTGGGGGAGCGTTTCAAAGCGTTAGAGTTTGTGAAAAAAAATAAAATGTAA
Upstream 100 bases:
>100_bases GTCATTATCATTGAATATCATAGCGCAAAAATAAGGCGATTTTGACTAGAATAGCGCTTCTATTGTTGTTGGTTGAGATG AGTTTAATGAAAGGAAAATC
Downstream 100 bases:
>100_bases AGCATTTTTACCATCTAAATAATAAAGAGTTTGCGTATTTTTAAGGGGGGGATTGGTGTTTTGGATTTTAGAATATTAAA CACTAAGCATTTACTATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MRSFGNYMQEWLYGEKGYYKKALIGQKGDFYTSVSLSKFFGGAVAFYIVKLLEEEKLFLPLKIVEIGAHHGHFLSDIANF LNALSVGVMEQCEFVSCEPLKELQKLQRTIFKQATQLDLMICDLKDLDFKGNESAFVVSNELFDAFACEIIKDNKMLFIT HDHKGVWGGIDEPTKELLKNLDLKQGCAPLFLEAFIKDLLEKLDEASSWVFLSFDYGDEIERKDMHLRAFKNHQALDFKD ILNNLASLYQKSDLTYDVNFSLVRFLFEKHHAKFSFFKSQANALLDMGLMELLETFSKSASYERYLKEAAKIKPLISPGG LGERFKALEFVKKNKM
Sequences:
>Translated_336_residues MRSFGNYMQEWLYGEKGYYKKALIGQKGDFYTSVSLSKFFGGAVAFYIVKLLEEEKLFLPLKIVEIGAHHGHFLSDIANF LNALSVGVMEQCEFVSCEPLKELQKLQRTIFKQATQLDLMICDLKDLDFKGNESAFVVSNELFDAFACEIIKDNKMLFIT HDHKGVWGGIDEPTKELLKNLDLKQGCAPLFLEAFIKDLLEKLDEASSWVFLSFDYGDEIERKDMHLRAFKNHQALDFKD ILNNLASLYQKSDLTYDVNFSLVRFLFEKHHAKFSFFKSQANALLDMGLMELLETFSKSASYERYLKEAAKIKPLISPGG LGERFKALEFVKKNKM >Mature_336_residues MRSFGNYMQEWLYGEKGYYKKALIGQKGDFYTSVSLSKFFGGAVAFYIVKLLEEEKLFLPLKIVEIGAHHGHFLSDIANF LNALSVGVMEQCEFVSCEPLKELQKLQRTIFKQATQLDLMICDLKDLDFKGNESAFVVSNELFDAFACEIIKDNKMLFIT HDHKGVWGGIDEPTKELLKNLDLKQGCAPLFLEAFIKDLLEKLDEASSWVFLSFDYGDEIERKDMHLRAFKNHQALDFKD ILNNLASLYQKSDLTYDVNFSLVRFLFEKHHAKFSFFKSQANALLDMGLMELLETFSKSASYERYLKEAAKIKPLISPGG LGERFKALEFVKKNKM
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38633; Mature: 38633
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSFGNYMQEWLYGEKGYYKKALIGQKGDFYTSVSLSKFFGGAVAFYIVKLLEEEKLFLP CCCHHHHHHHHHCCCCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEE LKIVEIGAHHGHFLSDIANFLNALSVGVMEQCEFVSCEPLKELQKLQRTIFKQATQLDLM EEHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEE ICDLKDLDFKGNESAFVVSNELFDAFACEIIKDNKMLFITHDHKGVWGGIDEPTKELLKN EECCCCCCCCCCCCEEEEEHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCHHHHHHHHC LDLKQGCAPLFLEAFIKDLLEKLDEASSWVFLSFDYGDEIERKDMHLRAFKNHQALDFKD CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHH ILNNLASLYQKSDLTYDVNFSLVRFLFEKHHAKFSFFKSQANALLDMGLMELLETFSKSA HHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MRSFGNYMQEWLYGEKGYYKKALIGQKGDFYTSVSLSKFFGGAVAFYIVKLLEEEKLFLP CCCHHHHHHHHHCCCCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEE LKIVEIGAHHGHFLSDIANFLNALSVGVMEQCEFVSCEPLKELQKLQRTIFKQATQLDLM EEHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEE ICDLKDLDFKGNESAFVVSNELFDAFACEIIKDNKMLFITHDHKGVWGGIDEPTKELLKN EECCCCCCCCCCCCEEEEEHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCHHHHHHHHC LDLKQGCAPLFLEAFIKDLLEKLDEASSWVFLSFDYGDEIERKDMHLRAFKNHQALDFKD CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHH ILNNLASLYQKSDLTYDVNFSLVRFLFEKHHAKFSFFKSQANALLDMGLMELLETFSKSA HHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA