| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527311
Identifier: 188527311
GI number: 188527311
Start: 502564
End: 503301
Strand: Reverse
Name: 188527311
Synonym: HPSH_02590
Alternate gene names: NA
Gene position: 503301-502564 (Counterclockwise)
Preceding gene: 188527312
Following gene: 188527304
Centisome position: 31.29
GC content: 37.4
Gene sequence:
>738_bases ATGCTAGAAGCCCTAAACGCCATAAACCAGCTTAACGCTCTTCATTCCAAAAACGCCGTGCACCATTTTAACGCTACCTT ACCCATTCTTTTAAAGGTTTTAGAAAAACAAGATAAAGATCTTTTCCTTTTGCAAGTGGGTAATAGGATTATCCCCACCA AAAGCGAACAGGAATTGAAAATCAATCAGCCTTATTTTGCGACCATGCAAAGAAACCAACTGGGCGATATTGTGCTTAAA AATTTAGTGCCTGCCCCAAAAATTTTAGACGCATTGGACGATTTGAGTGTGCTTGAAATGAATAAAATCAAAGAAATATT GAGCGCTAAAGACAATACCCCTTTAAAAGAATATAAAGAACTTTTGAGCGAAAAATTAATCCATGCTAAAAATCCGCAAG AGTTTTTGAATACGGCCAACATGCTTTTAAGCTTGCAATCGCAGGTGTTAAGCTTTGTGATTGAAAACGAACGCAAAAAA GCTTTTTTGCAAGTGAAAGCCAAAAAACAAAGCGTTGATTTTTACGCTCTGTATCCTAATTTGGGCGAAATTAGCGGCGT TATTTATTTAAAGGAAAAAGAAAAACAGCTTTTTTTAAAAACCTCCCTCCAAAGGACTAAAGAAATTTTAAAAGAGGCTC AAAACACCCTTTTGGGCTTTTCTTGCGTGGAAATTGCATGCGAAAAAACCCCCATGCTTTTTGCCTTTGAAGAGCGTTTA TTGGACACGCTGGGGTAG
Upstream 100 bases:
>100_bases TGTGGCTCTTTAGCCATCACAAAACCCAAAAAATCCCTTCTATGAACAAATTAGAAGCGAGCTTTAAAATCCTTGATTTT ATCAAAGACAACGCCCTTTA
Downstream 100 bases:
>100_bases AAAACTAAAACTTGATTTTTTTAAAAAACGCTTTTTGTGGGATTTTAGAATCCCTCACGCATTTTTTAAAAGTTTTCCAA CCGCTAAGGCTTTATCTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MLEALNAINQLNALHSKNAVHHFNATLPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELKINQPYFATMQRNQLGDIVLK NLVPAPKILDALDDLSVLEMNKIKEILSAKDNTPLKEYKELLSEKLIHAKNPQEFLNTANMLLSLQSQVLSFVIENERKK AFLQVKAKKQSVDFYALYPNLGEISGVIYLKEKEKQLFLKTSLQRTKEILKEAQNTLLGFSCVEIACEKTPMLFAFEERL LDTLG
Sequences:
>Translated_245_residues MLEALNAINQLNALHSKNAVHHFNATLPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELKINQPYFATMQRNQLGDIVLK NLVPAPKILDALDDLSVLEMNKIKEILSAKDNTPLKEYKELLSEKLIHAKNPQEFLNTANMLLSLQSQVLSFVIENERKK AFLQVKAKKQSVDFYALYPNLGEISGVIYLKEKEKQLFLKTSLQRTKEILKEAQNTLLGFSCVEIACEKTPMLFAFEERL LDTLG >Mature_245_residues MLEALNAINQLNALHSKNAVHHFNATLPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELKINQPYFATMQRNQLGDIVLK NLVPAPKILDALDDLSVLEMNKIKEILSAKDNTPLKEYKELLSEKLIHAKNPQEFLNTANMLLSLQSQVLSFVIENERKK AFLQVKAKKQSVDFYALYPNLGEISGVIYLKEKEKQLFLKTSLQRTKEILKEAQNTLLGFSCVEIACEKTPMLFAFEERL LDTLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27948; Mature: 27948
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEALNAINQLNALHSKNAVHHFNATLPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK CCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCEE INQPYFATMQRNQLGDIVLKNLVPAPKILDALDDLSVLEMNKIKEILSAKDNTPLKEYKE CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHH LLSEKLIHAKNPQEFLNTANMLLSLQSQVLSFVIENERKKAFLQVKAKKQSVDFYALYPN HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCEEEECCC LGEISGVIYLKEKEKQLFLKTSLQRTKEILKEAQNTLLGFSCVEIACEKTPMLFAFEERL CCHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LDTLG HHHCC >Mature Secondary Structure MLEALNAINQLNALHSKNAVHHFNATLPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK CCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCEE INQPYFATMQRNQLGDIVLKNLVPAPKILDALDDLSVLEMNKIKEILSAKDNTPLKEYKE CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHH LLSEKLIHAKNPQEFLNTANMLLSLQSQVLSFVIENERKKAFLQVKAKKQSVDFYALYPN HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCEEEECCC LGEISGVIYLKEKEKQLFLKTSLQRTKEILKEAQNTLLGFSCVEIACEKTPMLFAFEERL CCHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LDTLG HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA