| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is tdhA [H]
Identifier: 188527279
GI number: 188527279
Start: 467884
End: 470259
Strand: Reverse
Name: tdhA [H]
Synonym: HPSH_02430
Alternate gene names: 188527279
Gene position: 470259-467884 (Counterclockwise)
Preceding gene: 188527283
Following gene: 188527277
Centisome position: 29.23
GC content: 43.9
Gene sequence:
>2376_bases ATGTTTTTAAGATCATATCCAAAGCTTAGATACGCTTTGTGTTTCCCCCTACTCGCTGATACTTGCTATAGCGAAGAGCG CACTTTAAATAAGGTTACCACCCAAGCTAAAAGGATTTTCACTTACAACAATGAGTTTAAGGTAACTTCTAAAGAATTGG ATCAACGCCAAAGCAATGAAGTCAAGGACTTGTTTAGGACTAACCCTGATGTGAATGTGGGCGGAGGGAGCGTGATGGGA CAGAAAATCTATGTGAGAGGCATTGAAGACAGGCTTTTAAGGGTTACGGTGGATGGGGCTGCGCAAAATGGCAATATCTA CCACCACCAAGGCAACACCGTGATTGACCCTGGCATGCTTAAAAGCGTGGAAGTTACCAAAGGATCAGCGAATGCAAGCG CAGGGCCAGGAGCGATCGCAGGAGTGATTAAAATGGAGACTAAAGGAGCAGCTGATTTTATCCCTAGGGGGAAAAATTAT GCAGCGAGTGGGGCGGTGAGTTTTTATACCAATTTTGGCGATCGAGAGACTTTTAGATCGGCTTACCAAAACGCGCATTT TGATATTATCGCTTACTACACGCACCAAAACATCTTCTATTATAGAAGCGGCGCTACAGCGATGAAAAACCTTTTCAATC CCACACAAGCCGATAAAGAGCCAGGAACTCCTAGCGAGCAAAACAACGCTTTAGTTAAAATGAATGGTTATTTGAGCGAT AGAGACACGCTCACTTTCAGCTGGAACATGACACGAGATAACGCTACACGCCCTTTAAGGAGTAACGCTATAGGGTTAGC CTATCCTTGTGAAGCCCCTTTTAGCCCTGATAGCGACCAAGGGTGTCCTAATGTGTTGGATAGTTTCACAAGATACATGT ATCACTCCATCAATAGCGCTAACAATCTTTCCTTACAATACAAAAGGGAAGCGGGAAATTCTTTTGGCGACCCACGATTA GATTTTACCCTTTATACAAGCATTAGAAACGCCAAGTTTGATCCCCTATTTGATCCTAATGGCGTTTATGCTAAATTCCC CACTTCTCAAGCGAGCGCATGGGAAAAAGAAAATTACCCATGCGTTGAAGGCGGGTATTGCACCCCAAGCTTTTCAGATG TGGATAAACCAAGCTCACAGCCTAGGGATTTGTTTTTAAACAACACCGGCTTAAACCTTAAAATCGCGCATGTGATTGAT GAAGCCACAGACAGCCTTTTTGAATACGGATTCAACTACCAAAATTTAAGCGTTTTTGACGCTCGCATCCCTAAATCAGA GTTATACAGGCCTAATCAAGTTTATACTGATGATAAAGGGCAAAAACAAATCGCTTGCTCTCTTGTGGATAATAACCCCA ATGATCCTACTTTGTGCCAAAGAGGGAAAGCGAACGGGAATATTTATGGAGGCTATGTGCAAGCGAATTACTCACCTCAT AAAATCATCACTTTTGGAGCCGGGGTAAGGTGGGACGCATACACGCTTTATGATAAAGACTGGAACCACCGCTACACTCA AGGCTTTAGCCCTAGCGCGGCTCTTGTGATCAGCCCCATTGAGCCTTTATCTTTAAAAATCACTTATTCTCAAGTTACAA GGGGGGTTATGCCAGGAGATGGCGTGTATATGCGCCAAAACGATTTACGATACGCTAAAAATATCAAGCCTGAAGTGGGC TCTAACGCTGAATTTAATATTGATTATTCAAGCCAGTATTTTAGCGGGAGGGCTGCGGCGTTTTATCAGGCTCTGGATAA TTTCATCTCACAATACGCGCAAAGTTTGATTGTAACCAATTTGAGTCAAGCGATTAGGATTTATGGCTATGAAGTGGGTG GGACTTTCAAATACAAGGGCGTGAGTTTGAATGTGGGGATCTCGCGCACTTGGCCCACCACTAGGGGGTATTTAATGGCA GACAGCTATGAGCTTGCCGCAAGCACCGGTAATGTTTTTATCATTAAATTGGATTACACCATCCCCAAAACAGGGATCAA TCTTGCTTGGCTTAGCCGCTTTGTTACCGGTTTAGATTATTGCGGGTTTGATATTTACTTGCCTGATTACGGGACGGCTG AAAAACCCAAAACCCCTACCGATTTAGCCAAATGCGGATCCCAATTAGGGTTAGTGCATATGCATAAACCGGGCTATGGC GTGAGTAATTTTTATATCAATTGGAGTCCTAAAACCAAAAGCCGCTGGAAAGGTTTGTTGCTTTCAGCCGTGTTCAATAA TGTTTTCAACAAATTCTATGTGGATCAAACAAGCCCTTATGTCATGAGCCCGGACATGCCAGGCACTGACGCTATTAAAA GAGCGATCGCAGAGCCCGGGTTTAACGCGCGCTTTGAAGTGGCTTACAAATGGTGA
Upstream 100 bases:
>100_bases TAATTATCATACTATTATATCTCAATGCATTGACGGATTTTGTTTTTTTTTTTTTGTATTTTTATTTTTTTTGAATTTTT AAATTAAGGAGAGTTGTTTG
Downstream 100 bases:
>100_bases TTAGTGGGGTTTTAAGCGTTGCGCATGCGTGATAGCAACGGCTATCGCATCGCTAATATCCAAAGGCTTGATTTCGCTTG TGATGTTAAGCAAGCGTTTG
Product: iron-regulated outer membrane protein (frpB)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MFLRSYPKLRYALCFPLLADTCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMG QKIYVRGIEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGSANASAGPGAIAGVIKMETKGAADFIPRGKNY AASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALVKMNGYLSD RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSDQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRL DFTLYTSIRNAKFDPLFDPNGVYAKFPTSQASAWEKENYPCVEGGYCTPSFSDVDKPSSQPRDLFLNNTGLNLKIAHVID EATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVISPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVG SNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQSLIVTNLSQAIRIYGYEVGGTFKYKGVSLNVGISRTWPTTRGYLMA DSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSQLGLVHMHKPGYG VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAIKRAIAEPGFNARFEVAYKW
Sequences:
>Translated_791_residues MFLRSYPKLRYALCFPLLADTCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMG QKIYVRGIEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGSANASAGPGAIAGVIKMETKGAADFIPRGKNY AASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALVKMNGYLSD RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSDQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRL DFTLYTSIRNAKFDPLFDPNGVYAKFPTSQASAWEKENYPCVEGGYCTPSFSDVDKPSSQPRDLFLNNTGLNLKIAHVID EATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVISPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVG SNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQSLIVTNLSQAIRIYGYEVGGTFKYKGVSLNVGISRTWPTTRGYLMA DSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSQLGLVHMHKPGYG VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAIKRAIAEPGFNARFEVAYKW >Mature_791_residues MFLRSYPKLRYALCFPLLADTCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMG QKIYVRGIEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGSANASAGPGAIAGVIKMETKGAADFIPRGKNY AASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALVKMNGYLSD RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSDQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRL DFTLYTSIRNAKFDPLFDPNGVYAKFPTSQASAWEKENYPCVEGGYCTPSFSDVDKPSSQPRDLFLNNTGLNLKIAHVID EATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVISPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVG SNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQSLIVTNLSQAIRIYGYEVGGTFKYKGVSLNVGISRTWPTTRGYLMA DSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSQLGLVHMHKPGYG VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAIKRAIAEPGFNARFEVAYKW
Specific function: Heme receptor [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88534; Mature: 88534
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLRSYPKLRYALCFPLLADTCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNE CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEECCCEEEEHHHHHHHHHHH VKDLFRTNPDVNVGGGSVMGQKIYVRGIEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGML HHHHHHCCCCCCCCCCCEECCEEEEEECCCEEEEEEECCCCCCCCEEEECCCEEECCCCC KSVEVTKGSANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNFGDRETFRS EEEEEECCCCCCCCCCCCEEEEEEEECCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHH AYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALVKMNGYLSD HHCCCCEEEEEEEEECEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECEECC RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSDQGCPNVLDSFTRYMYHSINSA CCEEEEEEEECCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC NNLSLQYKREAGNSFGDPRLDFTLYTSIRNAKFDPLFDPNGVYAKFPTSQASAWEKENYP CCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC CVEGGYCTPSFSDVDKPSSQPRDLFLNNTGLNLKIAHVIDEATDSLFEYGFNYQNLSVFD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEE ARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH CCCCHHHCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEEEEEECCCCC KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVISPIEPLSLKITYSQVTRGVMPGD EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHCCCCCCC GVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQSLIVTN CEEEECCCCHHHHCCCCCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LSQAIRIYGYEVGGTFKYKGVSLNVGISRTWPTTRGYLMADSYELAASTGNVFIIKLDYT HHHEEEEEEEEECCEEEECCEEEECCEEECCCCCCCEEEECCEEEEECCCCEEEEEEECC IPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSQLGLVHMHKPGYG CCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHCCHHCCEEEEECCCCC VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAIKRAIAEPG CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCHHHHHHHHHCCC FNARFEVAYKW CCCEEEEEEEC >Mature Secondary Structure MFLRSYPKLRYALCFPLLADTCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNE CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEECCCEEEEHHHHHHHHHHH VKDLFRTNPDVNVGGGSVMGQKIYVRGIEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGML HHHHHHCCCCCCCCCCCEECCEEEEEECCCEEEEEEECCCCCCCCEEEECCCEEECCCCC KSVEVTKGSANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNFGDRETFRS EEEEEECCCCCCCCCCCCEEEEEEEECCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHHH AYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALVKMNGYLSD HHCCCCEEEEEEEEECEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECEECC RDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSDQGCPNVLDSFTRYMYHSINSA CCEEEEEEEECCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC NNLSLQYKREAGNSFGDPRLDFTLYTSIRNAKFDPLFDPNGVYAKFPTSQASAWEKENYP CCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC CVEGGYCTPSFSDVDKPSSQPRDLFLNNTGLNLKIAHVIDEATDSLFEYGFNYQNLSVFD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEE ARIPKSELYRPNQVYTDDKGQKQIACSLVDNNPNDPTLCQRGKANGNIYGGYVQANYSPH CCCCHHHCCCCCCEECCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCEEEEEEEECCCCC KIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVISPIEPLSLKITYSQVTRGVMPGD EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHCCCCCCC GVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQSLIVTN CEEEECCCCHHHHCCCCCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LSQAIRIYGYEVGGTFKYKGVSLNVGISRTWPTTRGYLMADSYELAASTGNVFIIKLDYT HHHEEEEEEEEECCEEEECCEEEECCEEECCCCCCCEEEECCEEEEECCCCEEEEEEECC IPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSQLGLVHMHKPGYG CCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHCCHHCCEEEEECCCCC VSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAIKRAIAEPG CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCHHHHHHHHHCCC FNARFEVAYKW CCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9712775 [H]