| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527249
Identifier: 188527249
GI number: 188527249
Start: 438458
End: 440353
Strand: Reverse
Name: 188527249
Synonym: HPSH_02280
Alternate gene names: NA
Gene position: 440353-438458 (Counterclockwise)
Preceding gene: 188527250
Following gene: 188527248
Centisome position: 27.38
GC content: 35.92
Gene sequence:
>1896_bases ATGCCCTTTTTAAAAGCCCTAGAATCTTTTGATGCACCCTTTTTAGAAAAAGAAATTTCAAAGCGTTTTAGGGATAATTT AGTTTTTTTCAAATCTTATAATCCCCATCTTTTTAACGCTCTCAATACGCCTTTTAAAAATTACCAATTGCTTTTTGAAA AAAACCACTTCAATCTCTTACACACACCCACAAACGCTTTAAGCTACCCTAAAAATCAAATGGTAGAAATCGCTTTTAAC ATGGCTTCTAACCCCCTGAATAATCCCAGATGGTCATTAGACAATAACCACCTCTCTTTAAACTATTTAAAAACTCAAAA CAACCCCAAACTCCCCCTAACCCTTAAAGCCACGCATGCGATCTCAAACTTTTTAGATGATTATCAAACGCCTTGCTCTT TAAAAAAATTCTTACCCCCTACCATGATTTATGGCGTCTTAGACGGCTTGTTTTTGGCCATTTTACAGGCTCAAAATTAC CGCTTCCATTCGCTTTATTTGTTTGAAGAAAATTTAGATTTGTTTAAAATCAGCTGTTATTTTGCGCGTTATGAAGATTT GATTACAAAAGGGGCTAAACTCTTTATTCAAGGGTTTTTTAACCCTAATGAATTAAAAATGGATTTTTTGAAACGCCCTA TCACGCATTCTTTTTTAAAGCTAGAAATCATGCCCTATAAAAGCGCTTTTAATTCACGCATGCGAGAAAACATTCAAAGC TATTACAAACAAGCTTTAAGGGGTTGGGGGAGTTTTGAAGATGAATTGCTAGGATTAAAAAACACGCTTAAAAACTTACC CTTATACCAAACCCTAAAAACCAAACCTAAAAAGATTAACGCCCCCATTTGCGTGGTGGGTAACGGGCCAAGCCTGGATT TATTGTTGGATTTTTTAAAAGAAAATGAAGATCGTTTCATTATTTTTTCATGCGGAACCGCTTTAAAGCCTTTAAAAACG CATGGCATCAAAGTGGATTTTCAAATAGAAGTGGAGCGCATAGACTATCTTAAAGAGGTTTTAGAAAAAGCTCCCCTAGA AGACACCCCCTTAATAGGGGCTAACATGCTCAATCCTAACGCTTTTAATATAGCCAAAGAAGCGTTAATGTTTATGCGTG GAGGGAGCGCTTGCGCGTATATAAGCCCTTTAAGTGTAGAATACGCAGCGCCTTTTGTGGGCAATGCCGGGGTGGCTTTA GCGAGTTTGATGAGCGATGAAATTTATTTGTGCGCTTTAGATTGCGCTTATATCAAAGGGTTTAAAAAACACGCTCAAAA TTCCTATTATGAAAATGAAAAAGAAATTGACCCTTCGTCTTTAATCAGCGTAGAGGGTAATTTTAAAGGTTATGAAACTT TTAGCGACTCGCTTTTTTTGCTCTCTAAAGAAAGGATTGAAGAAGCCCTTAATTATTACCAACCTAAAAAAGTCTATAAT TTAAGTTATGGGGCTAAAATCAAGCATGCCGTTAGCCTCAATTATTCTCAAGTAAAATTGAAACATTCCAACAAACAAGA AGCTATCGCTCGCATTAAAAGCATGTTTAGCCCTAAAAGTAACCATGCTAAGGATTTAAAAAATTTGCAAAAAAATCTGA TCCGTTTTCAAGAGGATTTTTTCATGCGTTTAAACACGCCTTGCAAAACCAAGCAAGAAATATTTGAATGGGTGGATAAT TTGAATGGATTTTGCCAAACAACAAGCGCTAAAACCCCCACTATAGGCATTTTATTTGAAGGGAGTATCGCTCATATCTT ACAAAGCGTATTGATCGTTTCATTGCATCTTAACGAAAATGAGCTTACGCATTTTACCAAATTCTCTCAAAACGCCTTAA AACAATTCCTTAAAAAAGCTTGTTTGTTATTGCAAATGCGACTCAAACAACCATGA
Upstream 100 bases:
>100_bases GAACAAGATTTTATCTCGTTGAAAAAGATCGCTCTCGCTTCCCAACTCTTAGAAAATGCTTTAAAAAACTCCTAAGGGGT CTTATGAAAAAGGCTATTGA
Downstream 100 bases:
>100_bases TTTTTATTTTTACATTATAATAACAACCTTAAATCAAAGGGGTGTTCATGCCACACAATGAAATCACAAGGGTTCAAGTC CCTGCCTTAATGCATTTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MPFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLLHTPTNALSYPKNQMVEIAFN MASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHAISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLKENEDRFIIFSCGTALKPLKT HGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPNAFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL ASLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDFFMRLNTPCKTKQEIFEWVDN LNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNENELTHFTKFSQNALKQFLKKACLLLQMRLKQP
Sequences:
>Translated_631_residues MPFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLLHTPTNALSYPKNQMVEIAFN MASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHAISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLKENEDRFIIFSCGTALKPLKT HGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPNAFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL ASLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDFFMRLNTPCKTKQEIFEWVDN LNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNENELTHFTKFSQNALKQFLKKACLLLQMRLKQP >Mature_630_residues PFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLLHTPTNALSYPKNQMVEIAFNM ASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHAISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYR FHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQSY YKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLKENEDRFIIFSCGTALKPLKTH GIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPNAFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALA SLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYNL SYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDFFMRLNTPCKTKQEIFEWVDNL NGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNENELTHFTKFSQNALKQFLKKACLLLQMRLKQP
Specific function: Unknown
COG id: COG2604
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72566; Mature: 72435
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLL CCHHHHHHHCCCHHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEECCCCEEE HTPTNALSYPKNQMVEIAFNMASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHA ECCCHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHH ISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY HHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHH FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEECHHHHHHHHHHHHHH YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLK HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH ENEDRFIIFSCGTALKPLKTHGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPN CCCCEEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALASLMSDEIYLCALDCAYIKG HHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCHHHHHHHHCCCEEEEEEHHHHHHH FKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCEEE LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDF CCCCCEEEEEEECCHHEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FMRLNTPCKTKQEIFEWVDNLNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNEN HHCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEECCHHHHHHHHHHHEEEECCCC ELTHFTKFSQNALKQFLKKACLLLQMRLKQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLL CHHHHHHHCCCHHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEECCCCEEE HTPTNALSYPKNQMVEIAFNMASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHA ECCCHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHH ISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY HHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHH FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEECHHHHHHHHHHHHHH YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLK HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH ENEDRFIIFSCGTALKPLKTHGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPN CCCCEEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALASLMSDEIYLCALDCAYIKG HHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCHHHHHHHHCCCEEEEEEHHHHHHH FKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCEEE LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDF CCCCCEEEEEEECCHHEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH FMRLNTPCKTKQEIFEWVDNLNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNEN HHCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEECCHHHHHHHHHHHEEEECCCC ELTHFTKFSQNALKQFLKKACLLLQMRLKQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA