Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188527249

Identifier: 188527249

GI number: 188527249

Start: 438458

End: 440353

Strand: Reverse

Name: 188527249

Synonym: HPSH_02280

Alternate gene names: NA

Gene position: 440353-438458 (Counterclockwise)

Preceding gene: 188527250

Following gene: 188527248

Centisome position: 27.38

GC content: 35.92

Gene sequence:

>1896_bases
ATGCCCTTTTTAAAAGCCCTAGAATCTTTTGATGCACCCTTTTTAGAAAAAGAAATTTCAAAGCGTTTTAGGGATAATTT
AGTTTTTTTCAAATCTTATAATCCCCATCTTTTTAACGCTCTCAATACGCCTTTTAAAAATTACCAATTGCTTTTTGAAA
AAAACCACTTCAATCTCTTACACACACCCACAAACGCTTTAAGCTACCCTAAAAATCAAATGGTAGAAATCGCTTTTAAC
ATGGCTTCTAACCCCCTGAATAATCCCAGATGGTCATTAGACAATAACCACCTCTCTTTAAACTATTTAAAAACTCAAAA
CAACCCCAAACTCCCCCTAACCCTTAAAGCCACGCATGCGATCTCAAACTTTTTAGATGATTATCAAACGCCTTGCTCTT
TAAAAAAATTCTTACCCCCTACCATGATTTATGGCGTCTTAGACGGCTTGTTTTTGGCCATTTTACAGGCTCAAAATTAC
CGCTTCCATTCGCTTTATTTGTTTGAAGAAAATTTAGATTTGTTTAAAATCAGCTGTTATTTTGCGCGTTATGAAGATTT
GATTACAAAAGGGGCTAAACTCTTTATTCAAGGGTTTTTTAACCCTAATGAATTAAAAATGGATTTTTTGAAACGCCCTA
TCACGCATTCTTTTTTAAAGCTAGAAATCATGCCCTATAAAAGCGCTTTTAATTCACGCATGCGAGAAAACATTCAAAGC
TATTACAAACAAGCTTTAAGGGGTTGGGGGAGTTTTGAAGATGAATTGCTAGGATTAAAAAACACGCTTAAAAACTTACC
CTTATACCAAACCCTAAAAACCAAACCTAAAAAGATTAACGCCCCCATTTGCGTGGTGGGTAACGGGCCAAGCCTGGATT
TATTGTTGGATTTTTTAAAAGAAAATGAAGATCGTTTCATTATTTTTTCATGCGGAACCGCTTTAAAGCCTTTAAAAACG
CATGGCATCAAAGTGGATTTTCAAATAGAAGTGGAGCGCATAGACTATCTTAAAGAGGTTTTAGAAAAAGCTCCCCTAGA
AGACACCCCCTTAATAGGGGCTAACATGCTCAATCCTAACGCTTTTAATATAGCCAAAGAAGCGTTAATGTTTATGCGTG
GAGGGAGCGCTTGCGCGTATATAAGCCCTTTAAGTGTAGAATACGCAGCGCCTTTTGTGGGCAATGCCGGGGTGGCTTTA
GCGAGTTTGATGAGCGATGAAATTTATTTGTGCGCTTTAGATTGCGCTTATATCAAAGGGTTTAAAAAACACGCTCAAAA
TTCCTATTATGAAAATGAAAAAGAAATTGACCCTTCGTCTTTAATCAGCGTAGAGGGTAATTTTAAAGGTTATGAAACTT
TTAGCGACTCGCTTTTTTTGCTCTCTAAAGAAAGGATTGAAGAAGCCCTTAATTATTACCAACCTAAAAAAGTCTATAAT
TTAAGTTATGGGGCTAAAATCAAGCATGCCGTTAGCCTCAATTATTCTCAAGTAAAATTGAAACATTCCAACAAACAAGA
AGCTATCGCTCGCATTAAAAGCATGTTTAGCCCTAAAAGTAACCATGCTAAGGATTTAAAAAATTTGCAAAAAAATCTGA
TCCGTTTTCAAGAGGATTTTTTCATGCGTTTAAACACGCCTTGCAAAACCAAGCAAGAAATATTTGAATGGGTGGATAAT
TTGAATGGATTTTGCCAAACAACAAGCGCTAAAACCCCCACTATAGGCATTTTATTTGAAGGGAGTATCGCTCATATCTT
ACAAAGCGTATTGATCGTTTCATTGCATCTTAACGAAAATGAGCTTACGCATTTTACCAAATTCTCTCAAAACGCCTTAA
AACAATTCCTTAAAAAAGCTTGTTTGTTATTGCAAATGCGACTCAAACAACCATGA

Upstream 100 bases:

>100_bases
GAACAAGATTTTATCTCGTTGAAAAAGATCGCTCTCGCTTCCCAACTCTTAGAAAATGCTTTAAAAAACTCCTAAGGGGT
CTTATGAAAAAGGCTATTGA

Downstream 100 bases:

>100_bases
TTTTTATTTTTACATTATAATAACAACCTTAAATCAAAGGGGTGTTCATGCCACACAATGAAATCACAAGGGTTCAAGTC
CCTGCCTTAATGCATTTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 631; Mature: 630

Protein sequence:

>631_residues
MPFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLLHTPTNALSYPKNQMVEIAFN
MASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHAISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY
RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLKENEDRFIIFSCGTALKPLKT
HGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPNAFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL
ASLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN
LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDFFMRLNTPCKTKQEIFEWVDN
LNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNENELTHFTKFSQNALKQFLKKACLLLQMRLKQP

Sequences:

>Translated_631_residues
MPFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLLHTPTNALSYPKNQMVEIAFN
MASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHAISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY
RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLKENEDRFIIFSCGTALKPLKT
HGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPNAFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL
ASLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN
LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDFFMRLNTPCKTKQEIFEWVDN
LNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNENELTHFTKFSQNALKQFLKKACLLLQMRLKQP
>Mature_630_residues
PFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLLHTPTNALSYPKNQMVEIAFNM
ASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHAISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYR
FHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQSY
YKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLKENEDRFIIFSCGTALKPLKTH
GIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPNAFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALA
SLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYNL
SYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDFFMRLNTPCKTKQEIFEWVDNL
NGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNENELTHFTKFSQNALKQFLKKACLLLQMRLKQP

Specific function: Unknown

COG id: COG2604

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72566; Mature: 72435

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLL
CCHHHHHHHCCCHHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEECCCCEEE
HTPTNALSYPKNQMVEIAFNMASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHA
ECCCHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHH
ISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY
HHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHH
FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEECHHHHHHHHHHHHHH
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLK
HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
ENEDRFIIFSCGTALKPLKTHGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPN
CCCCEEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALASLMSDEIYLCALDCAYIKG
HHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCHHHHHHHHCCCEEEEEEHHHHHHH
FKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN
HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCEEE
LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDF
CCCCCEEEEEEECCHHEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FMRLNTPCKTKQEIFEWVDNLNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNEN
HHCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEECCHHHHHHHHHHHEEEECCCC
ELTHFTKFSQNALKQFLKKACLLLQMRLKQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PFLKALESFDAPFLEKEISKRFRDNLVFFKSYNPHLFNALNTPFKNYQLLFEKNHFNLL
CHHHHHHHCCCHHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEECCCCEEE
HTPTNALSYPKNQMVEIAFNMASNPLNNPRWSLDNNHLSLNYLKTQNNPKLPLTLKATHA
ECCCHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHH
ISNFLDDYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY
HHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHH
FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSRMRENIQS
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEECHHHHHHHHHHHHHH
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKTKPKKINAPICVVGNGPSLDLLLDFLK
HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
ENEDRFIIFSCGTALKPLKTHGIKVDFQIEVERIDYLKEVLEKAPLEDTPLIGANMLNPN
CCCCEEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AFNIAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALASLMSDEIYLCALDCAYIKG
HHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCHHHHHHHHCCCEEEEEEHHHHHHH
FKKHAQNSYYENEKEIDPSSLISVEGNFKGYETFSDSLFLLSKERIEEALNYYQPKKVYN
HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCEEE
LSYGAKIKHAVSLNYSQVKLKHSNKQEAIARIKSMFSPKSNHAKDLKNLQKNLIRFQEDF
CCCCCEEEEEEECCHHEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FMRLNTPCKTKQEIFEWVDNLNGFCQTTSAKTPTIGILFEGSIAHILQSVLIVSLHLNEN
HHCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEECCHHHHHHHHHHHEEEECCCC
ELTHFTKFSQNALKQFLKKACLLLQMRLKQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA