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The map label for this gene is yqxC [H]

Identifier: 188527169

GI number: 188527169

Start: 360832

End: 361539

Strand: Reverse

Name: yqxC [H]

Synonym: HPSH_01880

Alternate gene names: 188527169

Gene position: 361539-360832 (Counterclockwise)

Preceding gene: 188527170

Following gene: 188527168

Centisome position: 22.48

GC content: 36.3

Gene sequence:

>708_bases
ATGCGCTTAGATTACGCTTTATTCAACCAGCATTTAGTGAATAGCAGAGAAAAAGCTAAAGCGTTGGTTTTAAAAAATCA
GGTTTTAGTCAATAAAATGGTGGTTTCTAAACCCTCTTTTATTGTTAAAGAGGGCGATAAGATTGAGCTCATCGCTACAA
ACCTATTCGTTAGCAGGGCTGGGGAAAAATTAGCGGCTTTTTTAGAAACCCATTTCGTGGATTTTAAAGAAAAGGTGGTT
TTAGATGTGGGAGCGAGCAAGGGGGGCTTTAGTGAAGTGGCTCTTTTAAAAGGGGCTAAAAAGGTGCTTTGCGTGGATGT
GGGGAAAATGCAATTAGATGAAAATTTAAGGAACGATACACGCATAGAATGTCATGAAGAATGCGATATTAGAGAGTTTA
AAACGCCAGAAACAATTGATTTAGTGCTTTGTGATGTGAGCTTTATTTCTTTATATTGTATTTTAGAAGCGATTTTGCCT
TTAAGCGATGAATTTTTGGCGCTTTTTAAACCGCAATTTGAAGTGGGCAGAGCAACAAAACGCAATAAAAAGGGGGTGGT
GGTGGATAAAAAAGCCATTTTAAACGCTTTAGAAAACTTTAAAAACCATTTAAAAACAAAGGATTTTCAAATCTTAAAGA
TCCAAGAAAGCTTAGTGAAAGGGAAAAACGGGAATGTTGAATTTTTTATCCATTTCAAGCGAGCCTAA

Upstream 100 bases:

>100_bases
ATTATTTAGCGGTGCAAGAAGCCAAACTAGAGCTTGATGCCTATAGTTTAGGCAAGATTGTTTTTAATTTCGCTTATCAA
GTCCCCTTACCTCAATTTTA

Downstream 100 bases:

>100_bases
AATTAAAAGCCTGGCTATCGGTAAATTTGACGGCTTGCATTTAGGGCATCAAGCCCTTTTTAAGGAATTAAAAGATCCCA
AAGCCCTTTTAATCATAGAA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFIVKEGDKIELIATNLFVSRAGEKLAAFLETHFVDFKEKVV
LDVGASKGGFSEVALLKGAKKVLCVDVGKMQLDENLRNDTRIECHEECDIREFKTPETIDLVLCDVSFISLYCILEAILP
LSDEFLALFKPQFEVGRATKRNKKGVVVDKKAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA

Sequences:

>Translated_235_residues
MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFIVKEGDKIELIATNLFVSRAGEKLAAFLETHFVDFKEKVV
LDVGASKGGFSEVALLKGAKKVLCVDVGKMQLDENLRNDTRIECHEECDIREFKTPETIDLVLCDVSFISLYCILEAILP
LSDEFLALFKPQFEVGRATKRNKKGVVVDKKAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA
>Mature_235_residues
MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFIVKEGDKIELIATNLFVSRAGEKLAAFLETHFVDFKEKVV
LDVGASKGGFSEVALLKGAKKVLCVDVGKMQLDENLRNDTRIECHEECDIREFKTPETIDLVLCDVSFISLYCILEAILP
LSDEFLALFKPQFEVGRATKRNKKGVVVDKKAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26630; Mature: 26630

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFIVKEGDKIELIATNLFVSRA
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEHHHHHHH
GEKLAAFLETHFVDFKEKVVLDVGASKGGFSEVALLKGAKKVLCVDVGKMQLDENLRNDT
HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHCCCCC
RIECHEECDIREFKTPETIDLVLCDVSFISLYCILEAILPLSDEFLALFKPQFEVGRATK
CEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCC
RNKKGVVVDKKAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA
CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFIVKEGDKIELIATNLFVSRA
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEHHHHHHH
GEKLAAFLETHFVDFKEKVVLDVGASKGGFSEVALLKGAKKVLCVDVGKMQLDENLRNDT
HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHCCCCC
RIECHEECDIREFKTPETIDLVLCDVSFISLYCILEAILPLSDEFLALFKPQFEVGRATK
CEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCC
RNKKGVVVDKKAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA
CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]