| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is kgtP [H]
Identifier: 188527164
GI number: 188527164
Start: 351634
End: 352920
Strand: Reverse
Name: kgtP [H]
Synonym: HPSH_01855
Alternate gene names: 188527164
Gene position: 352920-351634 (Counterclockwise)
Preceding gene: 188527165
Following gene: 188527163
Centisome position: 21.94
GC content: 40.48
Gene sequence:
>1287_bases ATGAACCCCCAAGCCCAACCAGCCACCAAAAAACCCTTAAGATCTCTTTTAGCCGCTAGTTCAGGTAATTTAGTAGAATG GTATGACTTTTACGCTTATGCGTTCTTAGCGCCTTATTTTGCTAAGGAATTTACCCACACTAACGACCCCACTTTAGCGC TAATCTCAGCTTTTTTAGTTTTCATGCTAGGGTTTTTCATGCGCCCTTTGGGGAGTTTGTTTTTTGGTAAATTGGGGGAT AAAAAGGGGCGTAAAACTTCTATGGTGTATTCCATTATCCTTATGGCGCTAGGCTCTTTCATGCTCGCATTGCTCCCCAC TAAAGAAATCGTAGGGGAATGGGCGTTCTTGTTTTTATTATTAGCCAGGCTTTTACAAGGCTTTAGCGTGGGAGGAGAAT ACGGCGTGGTCGCTACTTATCTCTCTGAATTAGGCAAGAACGGCAAAAAAGGTTTTTATGGTTCTTTTCAATATGTAACT TTAGTGGGAGGGCAACTCTTAGCTATTTTTTCACTCTTTATCGTTGAAAATATTTACACGCATGAGCAAATCAGCGCGTT TGCTTGGCGTTATTTATTCGCTTTAGGGGGTATATTAGCCCTACTCTCGCTCTTTTTAAGAAATATCATGGAAGAAACTA TGGATAGTCAAACAACTTCCAAAACCACCATTAAAGAAGAAACCCAAAGAGGCAGTTTGAAGGAGTTACTCAACCATAAA AAAGCCTTAATGATAGTCTTTGGGCTAACTATGGGAGGGAGTTTGTGTTTTTATACTTTTACGGTGTATTTAAAAATCTT TTTAACCAACAGCTCATCATTCAGCCCTAAAGAAAGCAGTTTTATCATGCTTTTAGCGCTCTCTTATTTTATCTTCTTAC AACCCTTATGCGGGATGCTGGCTGATAAAATCAAACGCACCCAAATGCTGATGGTTTTTGCTATCGCAGGGCTTATTGTA ACGCCCGTTGTCTTTTATGGTATCAAGCATGCTAGTGGCGTGTATGAAGCCCTATTTTATGAAATGCTTGCATTGAGTGC GATGAGTTTTTACACTTGCATTGCTGGGGTCGTTAAAGCGGAATTATTCCCTGAACATGTGCGAGCGCTTGGCGTGGGTT TAGCCTATGCGATTGCGAATGCGCTTTTTGGAGGGAGCGCGAGTTATGTAGCGTTGCAATTCAAACAACATGGTTTTGAA TGGGGGTTTGTGGGCTATGTCATGTTTAGTATTGTTATCTTTATGGTTATGGTTATCATATTCCCTAAAAAAACCTATTT GGAATAA
Upstream 100 bases:
>100_bases ATACAAATGATACCAACCTTTCATCTATTAATCAAATATTATCTGTGTATTCCCTAACTCCTAGTAAAATCACCTAAAAA TTTCATATTCAAGGATAGCC
Downstream 100 bases:
>100_bases ATCCTGGTTTTTATTTAATTTTTGCTATAATTTTTCTTTTAAAAGGATTCTTGCATGCAAAATGGGTATTATGCGGCCAC GGGAGCTATGGCGGCGCAAT
Product: alpha-ketoglutarate permease
Products: Proton [Cytoplasm]; 2-oxoglutarate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MNPQAQPATKKPLRSLLAASSGNLVEWYDFYAYAFLAPYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGD KKGRKTSMVYSIILMALGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVT LVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIMEETMDSQTTSKTTIKEETQRGSLKELLNHK KALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFIFLQPLCGMLADKIKRTQMLMVFAIAGLIV TPVVFYGIKHASGVYEALFYEMLALSAMSFYTCIAGVVKAELFPEHVRALGVGLAYAIANALFGGSASYVALQFKQHGFE WGFVGYVMFSIVIFMVMVIIFPKKTYLE
Sequences:
>Translated_428_residues MNPQAQPATKKPLRSLLAASSGNLVEWYDFYAYAFLAPYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGD KKGRKTSMVYSIILMALGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVT LVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIMEETMDSQTTSKTTIKEETQRGSLKELLNHK KALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFIFLQPLCGMLADKIKRTQMLMVFAIAGLIV TPVVFYGIKHASGVYEALFYEMLALSAMSFYTCIAGVVKAELFPEHVRALGVGLAYAIANALFGGSASYVALQFKQHGFE WGFVGYVMFSIVIFMVMVIIFPKKTYLE >Mature_428_residues MNPQAQPATKKPLRSLLAASSGNLVEWYDFYAYAFLAPYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGD KKGRKTSMVYSIILMALGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVT LVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIMEETMDSQTTSKTTIKEETQRGSLKELLNHK KALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFIFLQPLCGMLADKIKRTQMLMVFAIAGLIV TPVVFYGIKHASGVYEALFYEMLALSAMSFYTCIAGVVKAELFPEHVRALGVGLAYAIANALFGGSASYVALQFKQHGFE WGFVGYVMFSIVIFMVMVIIFPKKTYLE
Specific function: Uptake of alpha-ketoglutarate across the boundary membrane with the concomitant import of a cation (symport system) [H]
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1788942, Length=417, Percent_Identity=46.2829736211031, Blast_Score=345, Evalue=3e-96, Organism=Escherichia coli, GI1790550, Length=376, Percent_Identity=28.7234042553192, Blast_Score=182, Evalue=4e-47, Organism=Escherichia coli, GI1788292, Length=384, Percent_Identity=28.3854166666667, Blast_Score=156, Evalue=2e-39, Organism=Escherichia coli, GI1789941, Length=399, Percent_Identity=29.0726817042606, Blast_Score=119, Evalue=5e-28, Organism=Escherichia coli, GI87082404, Length=442, Percent_Identity=24.6606334841629, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87082231, Length=218, Percent_Identity=28.8990825688073, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 47698; Mature: 47698
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPQAQPATKKPLRSLLAASSGNLVEWYDFYAYAFLAPYFAKEFTHTNDPTLALISAFLV CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH FMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMALGSFMLALLPTKEIVGEWAFLFLL HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH LARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVTLVGGQLLAIFSLFIVENIYT HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HEQISAFAWRYLFALGGILALLSLFLRNIMEETMDSQTTSKTTIKEETQRGSLKELLNHK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHCCH KALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFIFLQPLCGML HHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ADKIKRTQMLMVFAIAGLIVTPVVFYGIKHASGVYEALFYEMLALSAMSFYTCIAGVVKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELFPEHVRALGVGLAYAIANALFGGSASYVALQFKQHGFEWGFVGYVMFSIVIFMVMVII HHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHH FPKKTYLE CCCHHHCC >Mature Secondary Structure MNPQAQPATKKPLRSLLAASSGNLVEWYDFYAYAFLAPYFAKEFTHTNDPTLALISAFLV CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH FMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMALGSFMLALLPTKEIVGEWAFLFLL HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH LARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVTLVGGQLLAIFSLFIVENIYT HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HEQISAFAWRYLFALGGILALLSLFLRNIMEETMDSQTTSKTTIKEETQRGSLKELLNHK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHCCH KALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFIFLQPLCGML HHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ADKIKRTQMLMVFAIAGLIVTPVVFYGIKHASGVYEALFYEMLALSAMSFYTCIAGVVKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELFPEHVRALGVGLAYAIANALFGGSASYVALQFKQHGFEWGFVGYVMFSIVIFMVMVII HHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHH FPKKTYLE CCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; 2-oxoglutarate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + 2-oxoglutarate [Periplasm] = Proton [Cytoplasm] + 2-oxoglutarate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2118499; 9205837; 9278503; 1709493; 2190187; 2053984; 8419306 [H]