| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527031
Identifier: 188527031
GI number: 188527031
Start: 218946
End: 219779
Strand: Reverse
Name: 188527031
Synonym: HPSH_01170
Alternate gene names: NA
Gene position: 219779-218946 (Counterclockwise)
Preceding gene: 188527032
Following gene: 188527023
Centisome position: 13.66
GC content: 43.29
Gene sequence:
>834_bases ATGGAAGAATCAACAGCGTTTATTTTGGCTCTTGTGGGGCTATTCACCGGTATTACCGCCGGGTTTTTTGGTATTGGTGG GGGGGAGATTGTCGTCCCTAGCGCGATTTTTGCGCATTTTAGCTATAGCCATGCGGTGGGTATTTCGCTCATGCAAATGC TTTTTTCTTCAGTGGTCGGCTCTATCATCAATTACAAAAAGGGCTTATTGGATTTGAAAGAAGGCTCATTTGCCGCGTTT GGAGGGCTAATGGGGGCGATTTTAGGGAGCTTTATTCTAAAAATCATTGACGATAAGATTTTAATGGCGGTGTTTGTGGT GGTGGTGTGCTACACCTTTATCAAATACGCTTTTTCTAACAACAAGAAACCAGAACATTTTGAAGAAATGCATTTTGATT TGCATGCGAATAACAAAACGCCAGACAAAAAGCGCCCGATCCCTTTTGTGTCTATGGACAGAACGCATGGGGTTTTGATG CTCGCCGGTTTTGTTACCGGCATTTTTTCTATCCCGCTAGGCATGGGTGGGGGGATTTTAATGGTGCCGTTTTTGGGCTA TTTTTTGAAATACGATTCTAAAAAAATCGTGCCTTTGGGGCTGTTTTTTGTGGTGTTCGCTTCTTTATCCGGGGTCATTT CTCTTTATAACGGGAGGGTTCTTGATGATATAAGCGTTCAAGCGGGGGTGATTACCGGTATTGGAGCGTTTTTAGGGGTG GGCATTGGCATTAAGCTTATCGCTTTGGCTAATGAAAAGGTGCATAAAATCCTGTTGCTCCTCATTTATGCTTTAAGCAT TTTAGCGACTTTGCACAAGCTCATTATGGGGTAA
Upstream 100 bases:
>100_bases ACTAATCAAAACCCTATTTTTGCAATCATTAAAGAAAATTTTTTTAAAGATTATCACTCTTTTTTGATAAAGTAATAATT TAGAATTTAGGGAGTTTTTC
Downstream 100 bases:
>100_bases AAATCTAAAAACGCTTCAAGGGGCATTTTTAAAAATCAATCAGCAAAAGAGCTTGATTTAATCAAAGGATAGCTTTTTAA AAAAGTTTTAATTATCCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: Inner Membrane Protein OxaA; Integral Membrane Protein- Permeases
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MEESTAFILALVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVGSIINYKKGLLDLKEGSFAAF GGLMGAILGSFILKIIDDKILMAVFVVVVCYTFIKYAFSNNKKPEHFEEMHFDLHANNKTPDKKRPIPFVSMDRTHGVLM LAGFVTGIFSIPLGMGGGILMVPFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGRVLDDISVQAGVITGIGAFLGV GIGIKLIALANEKVHKILLLLIYALSILATLHKLIMG
Sequences:
>Translated_277_residues MEESTAFILALVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVGSIINYKKGLLDLKEGSFAAF GGLMGAILGSFILKIIDDKILMAVFVVVVCYTFIKYAFSNNKKPEHFEEMHFDLHANNKTPDKKRPIPFVSMDRTHGVLM LAGFVTGIFSIPLGMGGGILMVPFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGRVLDDISVQAGVITGIGAFLGV GIGIKLIALANEKVHKILLLLIYALSILATLHKLIMG >Mature_277_residues MEESTAFILALVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVGSIINYKKGLLDLKEGSFAAF GGLMGAILGSFILKIIDDKILMAVFVVVVCYTFIKYAFSNNKKPEHFEEMHFDLHANNKTPDKKRPIPFVSMDRTHGVLM LAGFVTGIFSIPLGMGGGILMVPFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGRVLDDISVQAGVITGIGAFLGV GIGIKLIALANEKVHKILLLLIYALSILATLHKLIMG
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29779; Mature: 29779
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEESTAFILALVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVG CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIINYKKGLLDLKEGSFAAFGGLMGAILGSFILKIIDDKILMAVFVVVVCYTFIKYAFSN HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NKKPEHFEEMHFDLHANNKTPDKKRPIPFVSMDRTHGVLMLAGFVTGIFSIPLGMGGGIL CCCCHHHHHHHHHEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHH MVPFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGRVLDDISVQAGVITGIGAFLGV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH GIGIKLIALANEKVHKILLLLIYALSILATLHKLIMG HHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEESTAFILALVGLFTGITAGFFGIGGGEIVVPSAIFAHFSYSHAVGISLMQMLFSSVVG CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIINYKKGLLDLKEGSFAAFGGLMGAILGSFILKIIDDKILMAVFVVVVCYTFIKYAFSN HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NKKPEHFEEMHFDLHANNKTPDKKRPIPFVSMDRTHGVLMLAGFVTGIFSIPLGMGGGIL CCCCHHHHHHHHHEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHH MVPFLGYFLKYDSKKIVPLGLFFVVFASLSGVISLYNGRVLDDISVQAGVITGIGAFLGV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH GIGIKLIALANEKVHKILLLLIYALSILATLHKLIMG HHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA