| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526991
Identifier: 188526991
GI number: 188526991
Start: 176868
End: 177677
Strand: Direct
Name: 188526991
Synonym: HPSH_00940
Alternate gene names: NA
Gene position: 176868-177677 (Clockwise)
Preceding gene: 188526990
Following gene: 188526994
Centisome position: 11.0
GC content: 40.99
Gene sequence:
>810_bases ATGTCAGAAAAAGAAAGACTGAATGAAGTGATCTTAGAAGAAGAAAATAATGGGGGCGGCACTAAAAAGGTGTTTTTGAT CGTGGCTATAGCCATTATCATTTTAGCGGTGCTTTTAATGGTGTTTTGGAAAAGCACGAGAGTCGCTCCTAAAGAGACTT TTTTACAAACCGATAGCGGCATGCAAAAAATAGGCAACACTAAAGACGAGAAAAAAGACGATGCGTTTGAAAGCTTGAAT TTGGATCCTTCCAAACAAGAAAGCGATCTGGACAAAGTGGCGGATAATGTTAAAAAGCAAGAAAGCGATGCGTTTAACAT GCCCATTCAAACCAATCAAACTCAAACGGAGATGAAAACAACAGAAGAAACGCAAGAAGCTAAAAAAGAATTAAAAGCTG TTGAGCACACTCCCATGAGCGCTCAAAAAGAATCTCAAGCTGTGGCTAAAAAAGAAACCCCCCATAAAAAGCCTAAAGCA ACCCCTAAAGATAAGGAAGCTCATAAAGATAAAGCTAAGCATGCGGCTAAAGAGCCAAAAGCCAAAAAAGAAGCTCACAA AGAAGTTCCTAAAAAAGCCAATTCTAAAACCAATCTTGCTAAAGGGCATTATTTGCAAGTGGGGGTTTTTGCACACACGC CCAACAAAGCGTTTTTGCAAGCGTTCAACCAATTCCCCCATAAGATTGAAGATAGGGGAGCGACGAAGCGCTATCTCATA GGCCCGTATAAGAGCAAGCAAGAAGCCTTAATGCATGCTGATGAAGTCAGCAAGAAGATGACTAAACCGGTTGTCATAGA AGCGCGCTAG
Upstream 100 bases:
>100_bases TAAGGAATTTAATATTTTAGCTTTACCTTATGAAGTGTTTGCAAAAGAGCGAGGGAGCTCTTGGGCGAAGCATTTATAAC AATTTTTGAAAGGATTTTTG
Downstream 100 bases:
>100_bases GGGTTTTGATCTAGAAATTCTTATTCTTTTCTTGGGCAGTTTTTAGCGGATCGCCCAAGCATTAAAACGGGCAACTTACT CCATCGGCTCGCATAATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MSEKERLNEVILEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDAFESLN LDPSKQESDLDKVADNVKKQESDAFNMPIQTNQTQTEMKTTEETQEAKKELKAVEHTPMSAQKESQAVAKKETPHKKPKA TPKDKEAHKDKAKHAAKEPKAKKEAHKEVPKKANSKTNLAKGHYLQVGVFAHTPNKAFLQAFNQFPHKIEDRGATKRYLI GPYKSKQEALMHADEVSKKMTKPVVIEAR
Sequences:
>Translated_269_residues MSEKERLNEVILEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDAFESLN LDPSKQESDLDKVADNVKKQESDAFNMPIQTNQTQTEMKTTEETQEAKKELKAVEHTPMSAQKESQAVAKKETPHKKPKA TPKDKEAHKDKAKHAAKEPKAKKEAHKEVPKKANSKTNLAKGHYLQVGVFAHTPNKAFLQAFNQFPHKIEDRGATKRYLI GPYKSKQEALMHADEVSKKMTKPVVIEAR >Mature_268_residues SEKERLNEVILEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDAFESLNL DPSKQESDLDKVADNVKKQESDAFNMPIQTNQTQTEMKTTEETQEAKKELKAVEHTPMSAQKESQAVAKKETPHKKPKAT PKDKEAHKDKAKHAAKEPKAKKEAHKEVPKKANSKTNLAKGHYLQVGVFAHTPNKAFLQAFNQFPHKIEDRGATKRYLIG PYKSKQEALMHADEVSKKMTKPVVIEAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30269; Mature: 30138
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKERLNEVILEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSG CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHH MQKIGNTKDEKKDDAFESLNLDPSKQESDLDKVADNVKKQESDAFNMPIQTNQTQTEMKT HHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH TEETQEAKKELKAVEHTPMSAQKESQAVAKKETPHKKPKATPKDKEAHKDKAKHAAKEPK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCH AKKEAHKEVPKKANSKTNLAKGHYLQVGVFAHTPNKAFLQAFNQFPHKIEDRGATKRYLI HHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHCCHHHHHCCCCCCEEE GPYKSKQEALMHADEVSKKMTKPVVIEAR CCCCCHHHHHHHHHHHHHHHCCCEEEECC >Mature Secondary Structure SEKERLNEVILEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSG CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHH MQKIGNTKDEKKDDAFESLNLDPSKQESDLDKVADNVKKQESDAFNMPIQTNQTQTEMKT HHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH TEETQEAKKELKAVEHTPMSAQKESQAVAKKETPHKKPKATPKDKEAHKDKAKHAAKEPK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCH AKKEAHKEVPKKANSKTNLAKGHYLQVGVFAHTPNKAFLQAFNQFPHKIEDRGATKRYLI HHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHCCHHHHHCCCCCCEEE GPYKSKQEALMHADEVSKKMTKPVVIEAR CCCCCHHHHHHHHHHHHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA