| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526899
Identifier: 188526899
GI number: 188526899
Start: 85970
End: 86860
Strand: Reverse
Name: 188526899
Synonym: HPSH_00470
Alternate gene names: NA
Gene position: 86860-85970 (Counterclockwise)
Preceding gene: 188526900
Following gene: 188526897
Centisome position: 5.4
GC content: 39.17
Gene sequence:
>891_bases ATGGCTTTTAAGGTGGTGCAAATTTGCGGAGGTCTTGGGAATCAAATGTTTCAATACGCTTTTGCTAAAAGTTTGCAAAA ACACCTTAATACGCCTGTGCTATTAGATATTACTTTTTTTGATGGGAGTAATAGGAAAATGCAATTAGAACTTTTCCCTA TTGATTTGCCCTATGCGAGTGCGAAAGAAATCGCTATAGCTAAAATGCAACACCTCCCCAAGCTAGTAAGAGATGCACTC AAATGCATGGGATTTGATAGGGTGAGTCAAGAAATCGTTTTTGAATACGAGCCTAAATTACTAAAGCCAAGCCGCTTGAC TTATTTTTTTGGCTATTTTCAAGATCCACGATATTTTGACGCTATATCCCCTTTAATCAAGCAAACCTTCACCCTACCCC CCCCAGAAAATAGTAAAAAAAAAGAGGAAGAATACCACCGCAAGCTTTCTTTGATTTTAGCCGCTAAAAACAGCGTGTTT GTGCATATAAGAAGAGGGGATTATGTGGGGATTGGCTGTCAGCTTGGTATTGATTATCAAAAAAAGGCGCTTGAGTATAT GGCAAAGCGCGTGCCAAACATGGAGCTTTTTGTGTTTTGCGAAGACTTAGAATTCACGCAAAACCTTGATCTGGGCTACC CTTTTATGGACATGACCACTAGAAATAAAGAAGAAGAGGCGTATTGGGATATGCTGCTCATGCAATCTTGTCAGCATGGC ATTATCGCTAATAGCACTTATAGCTGGTGGGCGGCTTATTTGATAAAAAATCCAGAAAAAATCATTATTGGCCCCAAACA CTGGCTTTTTGGGCATGAAAATATCCTTTGTGAGAAATGGGTGAAAATAGAATCCCATTTTGAGGTAAAATCCGAAAAGT ATAACGCTTAA
Upstream 100 bases:
>100_bases GATTTGAAAGCGTTACTTGCCCCACTTTTTGGGCTTTTATTGAAAAAGGGCTTTAAAATGAGCTAAAATTAGCACTTCAT TTGACAAATAAAGGGATTGA
Downstream 100 bases:
>100_bases AGCGGCTTAAAAAAGGCTTACTTAAGATTTAAATCTTTGATTTTAGATCGGATTTCTTTAAAGCGAGCGTCTAATTCTAA TTTCCTATCCATTGATATTT
Product: alpha-1,2-fucosyltransferase
Products: NA
Alternate protein names: Glycosyl Transferase Family; Glycosyl Transferase; Fucosyl Transferase; Glycosyltransferase Family; Glycosyl Transferase Family Protein; Family; Alpha-1 2-Fucosyltransferase Fragment; LPS Biosynthesis Related Alpha-1 2-Fucosyltransferase; Fucosyltransferase WbgN; Fucosyltransferase; Glycosyltransferase
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MAFKVVQICGGLGNQMFQYAFAKSLQKHLNTPVLLDITFFDGSNRKMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDAL KCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFDAISPLIKQTFTLPPPENSKKKEEEYHRKLSLILAAKNSVF VHIRRGDYVGIGCQLGIDYQKKALEYMAKRVPNMELFVFCEDLEFTQNLDLGYPFMDMTTRNKEEEAYWDMLLMQSCQHG IIANSTYSWWAAYLIKNPEKIIIGPKHWLFGHENILCEKWVKIESHFEVKSEKYNA
Sequences:
>Translated_296_residues MAFKVVQICGGLGNQMFQYAFAKSLQKHLNTPVLLDITFFDGSNRKMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDAL KCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFDAISPLIKQTFTLPPPENSKKKEEEYHRKLSLILAAKNSVF VHIRRGDYVGIGCQLGIDYQKKALEYMAKRVPNMELFVFCEDLEFTQNLDLGYPFMDMTTRNKEEEAYWDMLLMQSCQHG IIANSTYSWWAAYLIKNPEKIIIGPKHWLFGHENILCEKWVKIESHFEVKSEKYNA >Mature_295_residues AFKVVQICGGLGNQMFQYAFAKSLQKHLNTPVLLDITFFDGSNRKMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDALK CMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFDAISPLIKQTFTLPPPENSKKKEEEYHRKLSLILAAKNSVFV HIRRGDYVGIGCQLGIDYQKKALEYMAKRVPNMELFVFCEDLEFTQNLDLGYPFMDMTTRNKEEEAYWDMLLMQSCQHGI IANSTYSWWAAYLIKNPEKIIIGPKHWLFGHENILCEKWVKIESHFEVKSEKYNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34633; Mature: 34501
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFKVVQICGGLGNQMFQYAFAKSLQKHLNTPVLLDITFFDGSNRKMQLELFPIDLPYAS CCEEHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCC AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCEEEEEEECCCCHHHH AISPLIKQTFTLPPPENSKKKEEEYHRKLSLILAAKNSVFVHIRRGDYVGIGCQLGIDYQ HHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEECCEEEEEEECCCEEEEEEEECCCHH KKALEYMAKRVPNMELFVFCEDLEFTQNLDLGYPFMDMTTRNKEEEAYWDMLLMQSCQHG HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC IIANSTYSWWAAYLIKNPEKIIIGPKHWLFGHENILCEKWVKIESHFEVKSEKYNA EEECCCHHHHHHHEECCCCEEEECCCHHCCCCCCHHHHHHHHHHHCEEECCCCCCC >Mature Secondary Structure AFKVVQICGGLGNQMFQYAFAKSLQKHLNTPVLLDITFFDGSNRKMQLELFPIDLPYAS CEEHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCC AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCEEEEEEECCCCHHHH AISPLIKQTFTLPPPENSKKKEEEYHRKLSLILAAKNSVFVHIRRGDYVGIGCQLGIDYQ HHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEECCEEEEEEECCCEEEEEEEECCCHH KKALEYMAKRVPNMELFVFCEDLEFTQNLDLGYPFMDMTTRNKEEEAYWDMLLMQSCQHG HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC IIANSTYSWWAAYLIKNPEKIIIGPKHWLFGHENILCEKWVKIESHFEVKSEKYNA EEECCCHHHHHHHEECCCCEEEECCCHHCCCCCCHHHHHHHHHHHCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA