| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526886
Identifier: 188526886
GI number: 188526886
Start: 71672
End: 73459
Strand: Direct
Name: 188526886
Synonym: HPSH_00390
Alternate gene names: NA
Gene position: 71672-73459 (Clockwise)
Preceding gene: 188526885
Following gene: 188526887
Centisome position: 4.46
GC content: 42.17
Gene sequence:
>1788_bases ATGAAAGCTATAAAAGTACTTTTTATGATGACACTCAGTTTAAACGCTATTAGCGTGAATAGGGCGTTGTTTGACTTAAA AGATTCGCAATTAAAAGGGGAATTAACGCCAAAAATAGTGAATTTTGGGGGTTATAAAAGCAGCACCACAGAGTGGGGAG CTACGGCTTTAAACTATATCAATGCGGCTAATGGCGATGCGAAAAAATTCAGTGCGTTAGTGGAAAAAATGCGTTTTGGC TCTGGCATCTTGGGGAATTTAAGAGCGCATGCGCATTTAAGGCAAGCCCTAAAATTGCAAAAGAATTTGAAATATTGCCT TAAAATCATCGCTAGGGATTCTTTTTATAGTTACCGCACCGGTATTTATATCCCCTTAGGCATTTCTTTAAAAGATCAAA AAACGGCTCAAAAAATGCTCGCTGATTTGAGCGTGGTAGGGGCGTATCTCAAACAACAACAAGAGAATGAAAAGGCTCAA AGCCCTTATTACAGGAGCAACAACTATTACAACTCTTACTATAGCCCTTATTATGGGATGTATGGAATGGGCATGTATGG AATGGGCATGTATGGCATGTATGGCATGGGCATGTATGATTTTTATGACTTTTATGATGGCATGTATGGATTCTACCCTA ACATGTTTTTCATGATGCAAGTTCAAGATTACTTGATGTTAGAAAATTATATGTATGCGATCGATCAAGAAGAGATTTTA GACCATGACGCTTCTATTAATCAACTTGATACGCCTACTGATGATGACAGAGATGATAAGGACGATAAACCCTTACAGCA GGCTAATCTCATGAGCTTTTATCGTGATCCCAAATTCAGCAAAGGCATTCAAACCAACCGCTTGAATAGCGCTTTAGTCA ATTTAGACAACAGCCGCATGCTCAAAGACAATTCGCTTTTCCACACTAAAGCCATGCCCACTAAAAGCGTGGATGCGATA ACTTCTCAAGCCAAAGAGCTTAACCATTTAGTGGGGCAAATCAAAGAAATGAAGCAAGACGGGGCGAGTCCTAGTAAGAT TGATTCAGTTGTCAATAAAGCTATGGAAGTGAGGGATAAATTAGACAATAACTTAAACCAGCTAGACAATGACTTAAAAG ATCAAAAAGGGCTTTCAAGCGAGCAACAAGCTCAAGTGGATAAGGCTCTAGACAGCGTGCAACAATTAAGCCATAGTAGC GATGTGGTGGGGAATTATTTAGACGGGAGTTTGAAAATTGATGGCGATGATAGAGATGATTTGAATGATGCGATGGATAA CCCCATGCAACAACCCGTGCAACAAACGCCCACCAACAACATGGGCAACACCCATGCAAATGATAGCAAGGATCAAGGGG GTAACGCGCTCATAAACCCTAACAGCACCACTAACACCGATGACACTCACACCGACGATACTCACACTGACACTAACACC ACAAACGATACCAGTGCCACTGACACCCCCACTGATGATAAAGATGCTAGCGATATGAACAATACCGGCGATATGAATAA TACCGATACCGGCAACACGGACACCGGCAATACTGATACCGGTAACACTGATGATGCGAGCAACATGAACAACGGCAACG ATGATATGGGTAACGCTAATGACGACATGAGCAACGGCAACGACATGGGCGATGACATGAACAACGCGAACGACATGAAC GATGACATGGGTAATAGCAACAATGACATGGGCGATATGGGGGATATGAACGATGATATGGGTGGCGATATGGGAGACAT GGGGGATATGGGCGATATGGGGAATTGA
Upstream 100 bases:
>100_bases TTTTTAGGTTTTATTTTTTACTTTGGCTTGTTTTTAAAAGTCATTTTGATTTCTAAAAATAGTCTATAATGCTTTCAACA GATATTTTTTAAGGTTATAA
Downstream 100 bases:
>100_bases GATTAACCCCAAGAATATCAAAGAGTGATAGCTAAAATTTTAAGGAATATTCTTATCCCACAAGCACGAAAAACTCCGTC CTTTAGGACGCAAGATGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 595; Mature: 595
Protein sequence:
>595_residues MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYINAANGDAKKFSALVEKMRFG SGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQ SPYYRSNNYYNSYYSPYYGMYGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAI TSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSS DVVGNYLDGSLKIDGDDRDDLNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNANDDMSNGNDMGDDMNNANDMN DDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN
Sequences:
>Translated_595_residues MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYINAANGDAKKFSALVEKMRFG SGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQ SPYYRSNNYYNSYYSPYYGMYGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAI TSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSS DVVGNYLDGSLKIDGDDRDDLNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNANDDMSNGNDMGDDMNNANDMN DDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN >Mature_595_residues MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYINAANGDAKKFSALVEKMRFG SGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQ SPYYRSNNYYNSYYSPYYGMYGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAI TSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSS DVVGNYLDGSLKIDGDDRDDLNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNANDDMSNGNDMGDDMNNANDMN DDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66132; Mature: 66132
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 7.4 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 7.4 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYI CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHH NAANGDAKKFSALVEKMRFGSGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRT HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC GIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQSPYYRSNNYYNSYYSPYYGM CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH YGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL HCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHH DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRM CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCCCCE LKDNSLFHTKAMPTKSVDAITSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDK ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSSDVVGNYLDGSLKIDGDDRDD HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHH LNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT HHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNAN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DDMSNGNDMGDDMNNANDMNDDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKAIKVLFMMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYKSSTTEWGATALNYI CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHH NAANGDAKKFSALVEKMRFGSGILGNLRAHAHLRQALKLQKNLKYCLKIIARDSFYSYRT HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC GIYIPLGISLKDQKTAQKMLADLSVVGAYLKQQQENEKAQSPYYRSNNYYNSYYSPYYGM CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH YGMGMYGMGMYGMYGMGMYDFYDFYDGMYGFYPNMFFMMQVQDYLMLENYMYAIDQEEIL HCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHH DHDASINQLDTPTDDDRDDKDDKPLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRM CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCCCCE LKDNSLFHTKAMPTKSVDAITSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDK ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSSDVVGNYLDGSLKIDGDDRDD HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHH LNDAMDNPMQQPVQQTPTNNMGNTHANDSKDQGGNALINPNSTTNTDDTHTDDTHTDTNT HHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC TNDTSATDTPTDDKDASDMNNTGDMNNTDTGNTDTGNTDTGNTDDASNMNNGNDDMGNAN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DDMSNGNDMGDDMNNANDMNDDMGNSNNDMGDMGDMNDDMGGDMGDMGDMGDMGN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA