| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526869
Identifier: 188526869
GI number: 188526869
Start: 55951
End: 56661
Strand: Direct
Name: 188526869
Synonym: HPSH_00295
Alternate gene names: NA
Gene position: 55951-56661 (Clockwise)
Preceding gene: 188526867
Following gene: 188526870
Centisome position: 3.48
GC content: 40.23
Gene sequence:
>711_bases TTGTCTGACGATGAATTGGATTGCATCATAGCTTTTAGAGGGCAAGAATTTGAAAAGAATTTAGAGAATTTGATGCCGAG TCCTTTAGGCGTGCCTTCTTTTGATGAGAGCTTGAATTTAGCCAAAAAGCATTACGCTAAAAATTTTAAGGAAGCTTTAC AAGATTTTACAGAAAAAATCAAAGAATCCCCTAACGATTTGAACGCCATGAACGAAGCCTTTAATAACTTGGAAACAGAG TTAGAGCGCGCTACAGAAAATTTTAGCCAAAAAACAGTGTGCGTCTTAGAGCGGTATGAAAATTATAAGCAGCAAGCGTT GGGCTATGGCGAGTTTTTGGAAAAAGAAAAAGAGGGCTTTATTATAGATGAGCAAAACCCTTATCCGGAAGAAGTCCGCT TTAATGAGTTGCGTTTGGCGGAATTTGAGAGCGTTTTTAGCGCCATTGTGCCTTTAGAGGATTTAGATAAAACCGTATGC GCTCATCATGCCCTAAAGGCTTTAGAAGCCGCGCTTAAAAATAGGGATTTGGGCTTTGATGCGACAGAGTTGGAACAGAT CGCAAAAGGTTTCATTCCTAGGGGGTATTTGTGGCATTTTGATGCGAATGTTTTAGGGAATTTGGCGTTGGTGAGAGAAG AGCTATTATTAGGCGTGAAGCGCACGAAAGGATACTCACTATGGAAACAATTCCTACAAACTCAGAACTGA
Upstream 100 bases:
>100_bases TAAAGAAGAAATCAACAAATTAAAAGAAGAAAACACCAAACTAACCACAGAAAACACCGATTTATACGCTGATTTGAAAG ATAAGATCGATCGTAACGCT
Downstream 100 bases:
>100_bases ATTGGGAATTTGTAGAGCCGCTCAATGACAATGCGTTGAGTGGGTTAGAAGATCAATTAAAAATGGGATTGAGCGATGCG TTTAAGGACTTTATTAAACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MSDDELDCIIAFRGQEFEKNLENLMPSPLGVPSFDESLNLAKKHYAKNFKEALQDFTEKIKESPNDLNAMNEAFNNLETE LERATENFSQKTVCVLERYENYKQQALGYGEFLEKEKEGFIIDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKTVC AHHALKALEAALKNRDLGFDATELEQIAKGFIPRGYLWHFDANVLGNLALVREELLLGVKRTKGYSLWKQFLQTQN
Sequences:
>Translated_236_residues MSDDELDCIIAFRGQEFEKNLENLMPSPLGVPSFDESLNLAKKHYAKNFKEALQDFTEKIKESPNDLNAMNEAFNNLETE LERATENFSQKTVCVLERYENYKQQALGYGEFLEKEKEGFIIDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKTVC AHHALKALEAALKNRDLGFDATELEQIAKGFIPRGYLWHFDANVLGNLALVREELLLGVKRTKGYSLWKQFLQTQN >Mature_235_residues SDDELDCIIAFRGQEFEKNLENLMPSPLGVPSFDESLNLAKKHYAKNFKEALQDFTEKIKESPNDLNAMNEAFNNLETEL ERATENFSQKTVCVLERYENYKQQALGYGEFLEKEKEGFIIDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKTVCA HHALKALEAALKNRDLGFDATELEQIAKGFIPRGYLWHFDANVLGNLALVREELLLGVKRTKGYSLWKQFLQTQN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27209; Mature: 27078
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDELDCIIAFRGQEFEKNLENLMPSPLGVPSFDESLNLAKKHYAKNFKEALQDFTEKI CCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KESPNDLNAMNEAFNNLETELERATENFSQKTVCVLERYENYKQQALGYGEFLEKEKEGF HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC IIDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKTVCAHHALKALEAALKNRDLGFD EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ATELEQIAKGFIPRGYLWHFDANVLGNLALVREELLLGVKRTKGYSLWKQFLQTQN HHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure SDDELDCIIAFRGQEFEKNLENLMPSPLGVPSFDESLNLAKKHYAKNFKEALQDFTEKI CCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KESPNDLNAMNEAFNNLETELERATENFSQKTVCVLERYENYKQQALGYGEFLEKEKEGF HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC IIDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKTVCAHHALKALEAALKNRDLGFD EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC ATELEQIAKGFIPRGYLWHFDANVLGNLALVREELLLGVKRTKGYSLWKQFLQTQN HHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA