| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188526862
Identifier: 188526862
GI number: 188526862
Start: 48613
End: 49611
Strand: Reverse
Name: 188526862
Synonym: HPSH_00260
Alternate gene names: NA
Gene position: 49611-48613 (Counterclockwise)
Preceding gene: 188526863
Following gene: 188526861
Centisome position: 3.08
GC content: 34.33
Gene sequence:
>999_bases TTGTTGCTTGTTTCTTGCTTTTTAAACGCTATTGACCCTTTTAATTTAGGGGTGTTGTTGAGCCGTTTCCAAATTAAAAA TGGTTGTATTTATGGGGTGTGTTCTTATAAGGCTTCAAAATTTATCCATGGCTATGAAGAAAGCAAAGTGCAAGTTTTAA CCGCTCTCAATACTTTAAGCGCGCATCCAATTTGGCGATTCAATCAAGAGAGCGTTACAAAAATCAAAGGAACTTTTGTT TTTATTTTAGAAAACGACTTGCAATTAGATGAAAACTCTTTTTACAAGAAACTTTTAAACTCACTCATAGACAACGATTT TTTAAACCGCTCCTATTCAATGACCCCCAATCAAAGACTCTTTTTGAGCGGCTTTTTTGAAAGCAGGGGTAGCATTGATA CGCAACGAAATTTTTTGACTTTAGATTACTTCTTTCATAGCCCTTTAGAGTTTAAAAAATTCCATTATTTAATTGATTTT TTCAATATCCCTAGCGAAGTGCTGAATTTCAATTTCAGGGAATTACAGCCTGAATACGCGCAAGGCATCAACCAACGAAA CGCTCAATTTAGGATTTATTTAAATTGGTATTTATACCATATCGGTCTGTTTAACCCCTATAAAGCGCAAATCGCTCATC ATATTTTTAAAACCACTCTTATTGATGATGGCATTTATTATAAATTAAGGGATCGACCAACAACAGAATATCGTGGTAAT AGCTTTATAGAACGCGCTCATTTTTATTTGAAAAATGTCCATCAACAAGATTTAGATAAGAAAAGCATTGAAAAATTAAG GGAGCAGTTAGGATGGATTCAAGAGAGTGAGGAATTAGACGAGATAGCAAAATCATCAATTTTTATCGCATTCCAACGCC TAATGTTTGCAGCGCATGTTGCGGTGATTATGACATTAAAGAAAGGAGTTTTATTTCTTTGCCTTTGTATAAAATCACTC AAAATCCCGATTCCTACTACACTGAAATCCACCATGTGA
Upstream 100 bases:
>100_bases GAATGTGTTGCTACCAATAAAATTTTAGATAGCATTCTAAAACCTTTAAACAAAAACTAATGAGCACTATCTTATAATCC TTTTAAAAAATGAAAGGTTA
Downstream 100 bases:
>100_bases TTTCTTTAGGCAAAGACAAAGAATTAGATGTTTTGGCAAATCTTGCTAAAACTTTGCCCCGCTTGTCATAGGGCTTTAAA AAAAGGGGCTAGCGAAGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLSAHPIWRFNQESVTKIKGTFV FILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRLFLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDF FNIPSEVLNFNFRELQPEYAQGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHVAVIMTLKKGVLFLCLCIKSL KIPIPTTLKSTM
Sequences:
>Translated_332_residues MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLSAHPIWRFNQESVTKIKGTFV FILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRLFLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDF FNIPSEVLNFNFRELQPEYAQGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHVAVIMTLKKGVLFLCLCIKSL KIPIPTTLKSTM >Mature_332_residues MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLSAHPIWRFNQESVTKIKGTFV FILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRLFLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDF FNIPSEVLNFNFRELQPEYAQGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHVAVIMTLKKGVLFLCLCIKSL KIPIPTTLKSTM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39044; Mature: 39044
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLS CEEHEEHHHCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHC AHPIWRFNQESVTKIKGTFVFILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRL CCCCEEECHHHHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCEE FLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDFFNIPSEVLNFNFRELQPEYA EEEEEHHCCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHH QGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN CCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHV HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVIMTLKKGVLFLCLCIKSLKIPIPTTLKSTM HHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC >Mature Secondary Structure MLLVSCFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKASKFIHGYEESKVQVLTALNTLS CEEHEEHHHCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHC AHPIWRFNQESVTKIKGTFVFILENDLQLDENSFYKKLLNSLIDNDFLNRSYSMTPNQRL CCCCEEECHHHHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCEE FLSGFFESRGSIDTQRNFLTLDYFFHSPLEFKKFHYLIDFFNIPSEVLNFNFRELQPEYA EEEEEHHCCCCCCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHH QGINQRNAQFRIYLNWYLYHIGLFNPYKAQIAHHIFKTTLIDDGIYYKLRDRPTTEYRGN CCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC SFIERAHFYLKNVHQQDLDKKSIEKLREQLGWIQESEELDEIAKSSIFIAFQRLMFAAHV HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVIMTLKKGVLFLCLCIKSLKIPIPTTLKSTM HHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA