| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is eptA [H]
Identifier: 188526833
GI number: 188526833
Start: 20893
End: 22464
Strand: Reverse
Name: eptA [H]
Synonym: HPSH_00115
Alternate gene names: 188526833
Gene position: 22464-20893 (Counterclockwise)
Preceding gene: 188526834
Following gene: 188526832
Centisome position: 1.4
GC content: 38.68
Gene sequence:
>1572_bases TTGGCATCATTATTCCATTTGAAGTTTTTAAAGCCCTTAAGTTGTCTGCAAGCCGGTTTGCTTTATAACCTTATTTTTGG CGTTTTATACCATTTCCCTTTGTTCGCTTATGTCTATAAAGAAAGCAACCAGGTTAGTTTTATAGCCATGATTGTTGTTG TGCTTTTTTGCGTTAATGGCGCTCTTTTTTTAACATTAGGCTTGATCTCTATCCATTTGATGCGCCTAAGCGCGATTGTT TTTAGTTTGCTCAATTCCATCGCTTTCTATTTCATTAGCGCTTATAAGGTGTTTTTAAATAAGAGCATGATGGGTAATGT CTTAAACACCAATACGCATGAGCTTTTAGGCTTTTTGAGCGTTAAATTATTCATTGTTATCGTTGTTTTTGGGGTGTTGC CTGGCTATGTCATCTATAAAATCCCCCTCAAAAATTCTTCTAAAAAAGCGCCCTTTTTAGCGATCTTGGCGTTAGTGTTT ATCTTTATCGCTAGCGCTTTAATGAACGCTAAAAATTGGCTGTGGTTTGACAAGCATGCGAAATTCATAGGGGGCTTAAT TTTGCCTTTCGCTTATAGCGTGAACGCTTTTAGAGTGAGCGCTCTTAAATTTTTCGCCCCCACTATCAAGCCGCTCCCTC TTTTTTCGCCCAATCGTTCTCATTCGTTTGTGGTGCTAGTCATTGGCGAAAGCGCTAGGAAGCATAATTACGCCCTTTAT GGCTATAAAAAACCCACCACCCCAAAATTAAGCAAGCGTTTAGCCGATAATGAACTCACTCTTTTTAACGCCACTTCTTG CGCCACTTACACGACCGCGAGTTTGGAATGCATTTTAGATTCTTCTTTTAAAAACAGCTTGAACGCTTATGAAAATTTAC CGACTTACTTGACTAAAGCCGGTATCAAAGTCTTTTGGTATAGCGCGAATGACGGCGAAAAGAATGTTAAGGTTACAAGC TATCTTAAAAACTATGAATTGATTCAAAAATGCCCCAATTGTGAAGCGATCGCTCCTTATGATGAATCCTTACTCTATAA TTTGCCTGACCTTTTAAAAGAACACTCTAATGAAAATGTCTTACTCATCTTACACCTTGCAGGCTCGCATGGTCCCAACT ATGACAATAAAGTGCCTTTAAATTTTAGGGTGTTTAAACCCTATTGCTCAAGCGCTGATTTGTCTTCTTGCTCCAAAGAA AGCTTGATTAACGCCTATGACAACACCATTTTTTACAACGACTATCTGTTAGACAAGATCATTAGCATGCTCAAAAACGC CAAGCAGCCCGCCTTAATGATCTATTTGAGCGATCATGGCGAAAGTTTGGGCGAAGGAGCGTATTATTTGCATGGCATTC CTAAAAGCATCGCCCCCAAAGAACAATACGAGGTCCCCTTTATTGTTTATGCCAATGATCTTTTTAAAGAGAAGCATTCC ATCATTCAAACCCAAACCCCAATCAATCAAAATGTTATTTTCCATAGCATTTTAGGAGTGTTTGAAGATTTTAAAAACCC TAGCGCTGTTTATCGCCCTTCTTTAGATCTGCTTAAACACAAAAAAGAATAA
Upstream 100 bases:
>100_bases ATCTTGCGACCTAAAAGAGGGAGTTTTTCGCGCTGAATAAACCATAAAATCCCCATACCTACGATATAATCCTAAGATTG ATTGATTCTAAGGGGCGTGT
Downstream 100 bases:
>100_bases AATAATACGCATGAAAAGATTCTTATTTAAACAAAAATTTTTGGAAAGCCTGCCTAAAAGCTTTTCTAAAACTTTATTAG CGCTCAGTTTGGGCTTGATC
Product: lipid A phosphoethanolamine transferase
Products: NA
Alternate protein names: Polymyxin resistance protein pmrC [H]
Number of amino acids: Translated: 523; Mature: 522
Protein sequence:
>523_residues MASLFHLKFLKPLSCLQAGLLYNLIFGVLYHFPLFAYVYKESNQVSFIAMIVVVLFCVNGALFLTLGLISIHLMRLSAIV FSLLNSIAFYFISAYKVFLNKSMMGNVLNTNTHELLGFLSVKLFIVIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVF IFIASALMNAKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNRSHSFVVLVIGESARKHNYALY GYKKPTTPKLSKRLADNELTLFNATSCATYTTASLECILDSSFKNSLNAYENLPTYLTKAGIKVFWYSANDGEKNVKVTS YLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKE SLINAYDNTIFYNDYLLDKIISMLKNAKQPALMIYLSDHGESLGEGAYYLHGIPKSIAPKEQYEVPFIVYANDLFKEKHS IIQTQTPINQNVIFHSILGVFEDFKNPSAVYRPSLDLLKHKKE
Sequences:
>Translated_523_residues MASLFHLKFLKPLSCLQAGLLYNLIFGVLYHFPLFAYVYKESNQVSFIAMIVVVLFCVNGALFLTLGLISIHLMRLSAIV FSLLNSIAFYFISAYKVFLNKSMMGNVLNTNTHELLGFLSVKLFIVIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVF IFIASALMNAKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNRSHSFVVLVIGESARKHNYALY GYKKPTTPKLSKRLADNELTLFNATSCATYTTASLECILDSSFKNSLNAYENLPTYLTKAGIKVFWYSANDGEKNVKVTS YLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKE SLINAYDNTIFYNDYLLDKIISMLKNAKQPALMIYLSDHGESLGEGAYYLHGIPKSIAPKEQYEVPFIVYANDLFKEKHS IIQTQTPINQNVIFHSILGVFEDFKNPSAVYRPSLDLLKHKKE >Mature_522_residues ASLFHLKFLKPLSCLQAGLLYNLIFGVLYHFPLFAYVYKESNQVSFIAMIVVVLFCVNGALFLTLGLISIHLMRLSAIVF SLLNSIAFYFISAYKVFLNKSMMGNVLNTNTHELLGFLSVKLFIVIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFI FIASALMNAKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNRSHSFVVLVIGESARKHNYALYG YKKPTTPKLSKRLADNELTLFNATSCATYTTASLECILDSSFKNSLNAYENLPTYLTKAGIKVFWYSANDGEKNVKVTSY LKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKES LINAYDNTIFYNDYLLDKIISMLKNAKQPALMIYLSDHGESLGEGAYYLHGIPKSIAPKEQYEVPFIVYANDLFKEKHSI IQTQTPINQNVIFHSILGVFEDFKNPSAVYRPSLDLLKHKKE
Specific function: Catalyzes the addition of a phosphoethanolamine moiety to the lipid A. The phosphoethanolamine modification is required for resistance to polymyxin [H]
COG id: COG2194
COG function: function code R; Predicted membrane-associated, metal-dependent hydrolase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoethanolamine transferase family. EptA subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082372, Length=488, Percent_Identity=28.6885245901639, Blast_Score=206, Evalue=3e-54, Organism=Escherichia coli, GI87082286, Length=453, Percent_Identity=26.0485651214128, Blast_Score=135, Evalue=7e-33, Organism=Escherichia coli, GI87082223, Length=428, Percent_Identity=26.8691588785047, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1790392, Length=378, Percent_Identity=24.8677248677249, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787035, Length=277, Percent_Identity=26.3537906137184, Blast_Score=80, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012549 - InterPro: IPR000917 [H]
Pfam domain/function: PF08019 DUF1705; PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 59010; Mature: 58878
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: PS01037 SBP_BACTERIAL_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLFHLKFLKPLSCLQAGLLYNLIFGVLYHFPLFAYVYKESNQVSFIAMIVVVLFCVNG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC ALFLTLGLISIHLMRLSAIVFSLLNSIAFYFISAYKVFLNKSMMGNVLNTNTHELLGFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VKLFIVIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFIFIASALMNAKNWLWFDKHA HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH KFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNRSHSFVVLVIGESARKHNYALY HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE GYKKPTTPKLSKRLADNELTLFNATSCATYTTASLECILDSSFKNSLNAYENLPTYLTKA ECCCCCCHHHHHHHCCCCEEEEECCCCCEEEHHHHHEEECCHHHHHHHHHHCCHHHHHHC GIKVFWYSANDGEKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENV CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHCCHHHHHHCCCCCE LLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESLINAYDNTIFYNDYLLDKI EEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHCCEEEEHHHHHHHH ISMLKNAKQPALMIYLSDHGESLGEGAYYLHGIPKSIAPKEQYEVPFIVYANDLFKEKHS HHHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCEEEECHHHHHHHHH IIQTQTPINQNVIFHSILGVFEDFKNPSAVYRPSLDLLKHKKE HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHCCCC >Mature Secondary Structure ASLFHLKFLKPLSCLQAGLLYNLIFGVLYHFPLFAYVYKESNQVSFIAMIVVVLFCVNG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC ALFLTLGLISIHLMRLSAIVFSLLNSIAFYFISAYKVFLNKSMMGNVLNTNTHELLGFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VKLFIVIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFIFIASALMNAKNWLWFDKHA HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH KFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNRSHSFVVLVIGESARKHNYALY HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE GYKKPTTPKLSKRLADNELTLFNATSCATYTTASLECILDSSFKNSLNAYENLPTYLTKA ECCCCCCHHHHHHHCCCCEEEEECCCCCEEEHHHHHEEECCHHHHHHHHHHCCHHHHHHC GIKVFWYSANDGEKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENV CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHCCHHHHHHCCCCCE LLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESLINAYDNTIFYNDYLLDKI EEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHCCEEEEHHHHHHHH ISMLKNAKQPALMIYLSDHGESLGEGAYYLHGIPKSIAPKEQYEVPFIVYANDLFKEKHS HHHHHCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCHHCCCCEEEECHHHHHHHHH IIQTQTPINQNVIFHSILGVFEDFKNPSAVYRPSLDLLKHKKE HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8391535; 11677609 [H]