Click here to switch to the map view.

The map label for this gene is rpoN1

Identifier: 188990754

GI number:

Start: 1577533

End: 1578969

Strand: Reverse

Name: rpoN1

Synonym: xccb100_1358

Alternate gene names: NA

Gene position: NA

Preceding gene: 188990755

Following gene: 188990753

Centisome position: NA

GC content: NA

Gene sequence:

>1437_bases
ATGAAAGCCCGGCTCCAGACATCGTTAGGACAGCAGTTGGTCATGACGCCGCAATTGCGTCAGGCGATCAAACTATTGCA
GATGTCCACCACCGAGCTGGAAGTGGAAATCGCCGAAGCGGTGGAGACCAATCCACTGCTGGAGTGGGCCGACGAAGCCG
CGCACGCGGCCAGCGAGGCGCCGGTCGAACCGTCGCCCTCCGCCTCCAACGAAGAACGCCAACGCGACGAGCCGGCGCCT
GCCGAGCGCGACGACGACTGGTCGCAGGACGAGCTGCAGTGGACCGGCACTGGCAGTGGCGGCAGCTTCGACGATGACGA
CAACGGCGACGCCGCCGAACGCGTGGCCGAGTCCGAAACCCTGGCCGACCACCTGTTGTGGCAGTTGCACCTGTCACCGT
TGTCGCCAAGGGACCGCCAGATCGGCGCGATCCTGATCGATGCCCTGGACGAAGACGGCTACCTGCGCGAGCCGCTCAGC
GCGATTCTGGAGACGCTCAACCTCGGCAACGTGGACGAGGCCGAAGTGCTCACCGTGCTGCACCAGATCCAGCGCTTCGA
CCCGGTGGGCATCGGTGCGCGCTCGCTGGGCGAATGCCTCGCGCTGCAGCTGCAGGTGCTCGATGCGGCGACGCCGGCGC
GCGAGCTGGCGCTGCAGATCGTGGCCGGGCCGCTGGAACGGCTGCCGCGCAGCGGCATCGCCGGCCTGGCTCACGAACTC
AAGCGCTCCGCCGCCGATGTCGAGCAGGCCGTGCAGCTGGTGCGCTCGCTGGACCCGCGCCCGGGCAAGCAGATCAGCGC
GCTGTCGCAGGACACCTATGTAGTGCCGGACTGTGTGATCTGGCGCCAGCGTGGCGTCTGGCGCGCCGCCCTGGCTGGCC
GCGCGCAACCGAAGGTGACCATCCACCGCGGCTACGAGCAACTGATCCGCAGCTGCGGCGAATCCGACGCCGGCTACCTG
CGCGGCCAGCTACAGGAAGCGCGCTGGCTGCTCAAGAGCCTGGAGGCGCGCGGCGAGACCCTGCTGCGGGTGGTGCGCTG
CCTGCTGCAGCACCAGGCCGGGTTCCTGGAGTTCGGCGCGCAAGCGCTGCGCCCGCTGACCCTGCGCGAGATCGCCGGTG
AGCTGGGCCTGCACGAATCGACGATTTCGCGTGCCATTGCCCGCAAGTACGTGCGCACGCCGCGCGGCACCATCCCGCTG
CGCTCGTTCTTTGCCTCCGGCATCGACACCGACAGCGGCGGCGAGGCTTCCAGCACGGCGATCCAGGCGATGATCCGGCG
CCTGATCGATGCGGAAAACCCGCGCAAACCCTTGTCGGACGCCAAGTTGGCAGATCTGTTGAAAACTTCCGGCGTACCAG
TAGCGCGCCGCACCGTTGCGAAGTATCGTGAGGCCATGAACATTTCCGCCTCCCACGAACGCGTGCGCATCGCCTGA

Upstream 100 bases:

>100_bases
CGCTTTGCTCAACAATCCCGACGTGCGGCGCGTCTATCTGGGGGACACCTTCCGCCTTTGAGCGCGTCGCCGCGCCATAG
GTCATCCAGCTAGTGTCCGC

Downstream 100 bases:

>100_bases
CGTTGCAACCACCGCAACGCCGGCCTATGCCGGGTTCGCCGGACCACCGGAAAGGTTCATTGGCCCACCGACCAATGGAG
GTATCCGATGCGTATCGAGA

Product: RNA polymerase factor sigma-54

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>478_residues
MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEAPVEPSPSASNEERQRDEPAP
AERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLS
AILETLNLGNVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL
KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGESDAGYL
RGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPL
RSFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA

Sequences:
NA

Specific function: NA

COG id: COG1508

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA