BacMap

Definition	Ralstonia pickettii 12J chromosome chromosome 1, complete sequence.
Accession	NC_010682
Length	3,942,557

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The map label for this gene is 187930618

Identifier: 187930618

GI number: 187930618

Start: 3721624

End: 3722163

Strand: Reverse

Name: 187930618

Synonym: Rpic_3554

Alternate gene names: NA

Gene position: 3722163-3721624 (Counterclockwise)

Preceding gene: 187930623

Following gene: 187930615

Centisome position: 94.41

GC content: 62.59

Gene sequence:

>540_bases
ATGACACGCACGTCCCCTGATGCCGCACCGGCTCTGGCTGAGTCCTCGCCCACGCCGGAAGCGCCGGCCAAACTGCGCCG
CCGCGATCGCATTGAGGTGCGTGAATCTGGTGTGCACGGACGTGGTGTCTATGCTGTGGTCGCGATCGCACGCGGCAAGA
AGATCATCGAATACAAGGGCGAGCACATCACGTGGAAGGAGGCACTGCGCCGCCATCCGCATGACCCGTCCGATCCGAAT
CACACGTTCTACTTCAGCCTGGAAGACGGCAGCGTGATCGACGCCAAGTTCGGCGGCAACCGCGCGCGCTGGATCAACCA
CGCCTGCAAGCCGAACTGCGAAGCGCGGGAAGAGGATGGTCGCGTGTTCATTCATGCGCTGCGCGATATCGAACCTGGCG
AAGAGCTGTTCTACGACTACGGCCTCGTCATCGAAGGTCGGCAGACCAAGGCACTGAAGGAACAGTTTGCTTGCCGCTGC
GGCGCGAAGAGGTGCCGCGGCACGATGCTGGCGCCGCCCGCGAAGACCAAGAAGAAGTAA

Upstream 100 bases:

>100_bases
GACATGGGGTTGCGGCACATGTCGAGAAGCCATGCTTTTGGTGTAGGCTCACGGCTTCGTTGATCGACGTTCTTGTTTCG
CTTTACCGCGCCATTTCCTC

Downstream 100 bases:

>100_bases
GCCGAAGGTCCGCCGTTCAGACGGATTCGCTTGCCAGCGGCAGGCGCAACACGAAGCGCATCACGCGGGTGCCGTCGCGC
GCAATCGCATCATCGATGGC

Product: nuclear protein SET

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTRTSPDAAPALAESSPTPEAPAKLRRRDRIEVRESGVHGRGVYAVVAIARGKKIIEYKGEHITWKEALRRHPHDPSDPN
HTFYFSLEDGSVIDAKFGGNRARWINHACKPNCEAREEDGRVFIHALRDIEPGEELFYDYGLVIEGRQTKALKEQFACRC
GAKRCRGTMLAPPAKTKKK

Sequences:

>Translated_179_residues
MTRTSPDAAPALAESSPTPEAPAKLRRRDRIEVRESGVHGRGVYAVVAIARGKKIIEYKGEHITWKEALRRHPHDPSDPN
HTFYFSLEDGSVIDAKFGGNRARWINHACKPNCEAREEDGRVFIHALRDIEPGEELFYDYGLVIEGRQTKALKEQFACRC
GAKRCRGTMLAPPAKTKKK
>Mature_178_residues
TRTSPDAAPALAESSPTPEAPAKLRRRDRIEVRESGVHGRGVYAVVAIARGKKIIEYKGEHITWKEALRRHPHDPSDPNH
TFYFSLEDGSVIDAKFGGNRARWINHACKPNCEAREEDGRVFIHALRDIEPGEELFYDYGLVIEGRQTKALKEQFACRCG
AKRCRGTMLAPPAKTKKK

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI7662046, Length=143, Percent_Identity=38.4615384615385, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI56550039, Length=147, Percent_Identity=38.0952380952381, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=33.0935251798561, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI19913358, Length=136, Percent_Identity=36.0294117647059, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI19913350, Length=136, Percent_Identity=36.0294117647059, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI19913348, Length=136, Percent_Identity=36.0294117647059, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI109633019, Length=136, Percent_Identity=36.0294117647059, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI55741677, Length=148, Percent_Identity=30.4054054054054, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI91718902, Length=150, Percent_Identity=34.6666666666667, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI19923586, Length=153, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI27477095, Length=149, Percent_Identity=32.8859060402685, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI110349788, Length=134, Percent_Identity=33.5820895522388, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI156142197, Length=147, Percent_Identity=34.6938775510204, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI156142199, Length=147, Percent_Identity=34.6938775510204, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI224465233, Length=152, Percent_Identity=34.2105263157895, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI21361095, Length=110, Percent_Identity=39.0909090909091, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI23510384, Length=110, Percent_Identity=39.0909090909091, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI13699811, Length=148, Percent_Identity=33.1081081081081, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI148762969, Length=146, Percent_Identity=33.5616438356164, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI19923202, Length=110, Percent_Identity=39.0909090909091, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17552320, Length=148, Percent_Identity=35.8108108108108, Blast_Score=90, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17552316, Length=148, Percent_Identity=35.8108108108108, Blast_Score=90, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17552318, Length=148, Percent_Identity=35.8108108108108, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI193210440, Length=154, Percent_Identity=37.012987012987, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71993684, Length=147, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI25148423, Length=138, Percent_Identity=38.4057971014493, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25148426, Length=138, Percent_Identity=38.4057971014493, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71988186, Length=138, Percent_Identity=37.6811594202899, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193202392, Length=137, Percent_Identity=33.5766423357664, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25141373, Length=137, Percent_Identity=33.5766423357664, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565204, Length=158, Percent_Identity=31.0126582278481, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321911, Length=147, Percent_Identity=36.734693877551, Blast_Score=87, Evalue=1e-18,
Organism=Drosophila melanogaster, GI62472551, Length=143, Percent_Identity=39.1608391608392, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17136558, Length=143, Percent_Identity=39.1608391608392, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI19550181, Length=143, Percent_Identity=39.1608391608392, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI19550184, Length=143, Percent_Identity=39.1608391608392, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17136556, Length=143, Percent_Identity=39.1608391608392, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17737643, Length=134, Percent_Identity=36.5671641791045, Blast_Score=86, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24639197, Length=146, Percent_Identity=36.986301369863, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571451, Length=146, Percent_Identity=36.986301369863, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24650756, Length=149, Percent_Identity=36.9127516778523, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24641786, Length=133, Percent_Identity=36.8421052631579, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI281360813, Length=133, Percent_Identity=36.8421052631579, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI161078181, Length=157, Percent_Identity=33.7579617834395, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI18543183, Length=140, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221331070, Length=110, Percent_Identity=39.0909090909091, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24662251, Length=110, Percent_Identity=39.0909090909091, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20151; Mature: 20020

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTSPDAAPALAESSPTPEAPAKLRRRDRIEVRESGVHGRGVYAVVAIARGKKIIEYKG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCCCCCCEEEEEECCCCEEEEECC
EHITWKEALRRHPHDPSDPNHTFYFSLEDGSVIDAKFGGNRARWINHACKPNCEAREEDG
CEECHHHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCC
RVFIHALRDIEPGEELFYDYGLVIEGRQTKALKEQFACRCGAKRCRGTMLAPPAKTKKK
EEEEEEECCCCCCHHHHEECCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRTSPDAAPALAESSPTPEAPAKLRRRDRIEVRESGVHGRGVYAVVAIARGKKIIEYKG
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCCCCCCEEEEEECCCCEEEEECC
EHITWKEALRRHPHDPSDPNHTFYFSLEDGSVIDAKFGGNRARWINHACKPNCEAREEDG
CEECHHHHHHCCCCCCCCCCEEEEEEECCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCC
RVFIHALRDIEPGEELFYDYGLVIEGRQTKALKEQFACRCGAKRCRGTMLAPPAKTKKK
EEEEEEECCCCCCHHHHEECCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA