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The map label for this gene is alc

Identifier: 187930537

GI number: 187930537

Start: 3628484

End: 3629494

Strand: Reverse

Name: alc

Synonym: Rpic_3472

Alternate gene names: 187930537

Gene position: 3629494-3628484 (Counterclockwise)

Preceding gene: 187930541

Following gene: 187930536

Centisome position: 92.06

GC content: 65.08

Gene sequence:

>1011_bases
ATGGCGATGCCTACGCTCGATCCGAACGCGCCGGATTTCACGCGCCGATATCCGAACCTGGCGGACCCCCGCCTTGGCGC
CGAGGCCACGTTCGCGACCGACGAATTCTTCGCACCGAAAGACCGCATGCTCAATCCCGAGCCGGCGGTGTTCATTCCCG
GCAAGTACGACGACCACGGCAAGTGGATGGATGGCTGGGAAACGCGTCGCCGCCGCAATGGTGGCTATGACCACTGCATC
GTCCGCCTGGCCCGCCCGGGCGTCGTGAAGGGTGTGGACATCGACACCAGCCACTTCACAGGCAACTTTCCGCCGGCCGC
TTCCATCGAAGCTGCCTATCTGCCGGATGGCGAGCCGACCGATGCCACACAGTGGACTGAAATCGTTCCGTCGACCACGC
TGCAAGGCAACAGTCACGCCTACGTGGCCGTGGCCAGCACGCAAGCCTTCACGCACCTGCGCGTGAACATCTTCCCGGAT
GGCGGCATCGCGCGCCTGCGCGTCTACGGCCAGCCGCAGGTCGACTGGAAGGGCGCGGACCGCACCAAGCTGTTCGACCT
GGCCGCCATGGAAAACGGCGCCTACGTGGTCGAAGCGAACAACGAACATTTTGGGCCGGCTTCCCGCATGCTGATGCCGG
GCCGTGGCGTGAACATGGGCGATGGCTGGGAAACGCGCCGCCGCCGCGAACCGGGCAACGACTGGTGCGTGATCGCCCTG
GCCAACCCGGGCCGCATCCGCAAGATCGAAGTCGACACCGCCCACTTCAAGGGCAACTTCGCTGACCGCGTTTCCATCCA
GGCCGCCCGCGTGGTGGGCGGCACCGACAGCTCGCTGAAGACGCAGGCGATGTTCTGGCAAACGCTGCTGCCCGAGCAGA
AGCTGCAGATGGATCTGCAGCACTACTACGAGGCGGAAATCGCCGACCTGGGCATCGTCACGCACGTGCGCTTCAACATG
TTCCCGGACGGTGGTGTGTCGCGTCTGCGCCTGTGGGGGGTGATCGAATGA

Upstream 100 bases:

>100_bases
CCGGCGTTCCCATCGCCACAGTTTCGAGTGTCCTGACTCGCCGTTTTTGTTCGATGGGCTGGCCGTATAACATCCAGAGA
CAAACACCAAGGAGTTCCAC

Downstream 100 bases:

>100_bases
GCCAAGAAACCGCCGCACGCATTGCGCTGACCATCGAGCCGCTCACGCGCGAAGCCTTCGCGCCGTTCGGCGATGTGATC
GAGCTGGAAGGGGCCAAGCA

Product: allantoicase

Products: NA

Alternate protein names: Allantoate amidinohydrolase

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MAMPTLDPNAPDFTRRYPNLADPRLGAEATFATDEFFAPKDRMLNPEPAVFIPGKYDDHGKWMDGWETRRRRNGGYDHCI
VRLARPGVVKGVDIDTSHFTGNFPPAASIEAAYLPDGEPTDATQWTEIVPSTTLQGNSHAYVAVASTQAFTHLRVNIFPD
GGIARLRVYGQPQVDWKGADRTKLFDLAAMENGAYVVEANNEHFGPASRMLMPGRGVNMGDGWETRRRREPGNDWCVIAL
ANPGRIRKIEVDTAHFKGNFADRVSIQAARVVGGTDSSLKTQAMFWQTLLPEQKLQMDLQHYYEAEIADLGIVTHVRFNM
FPDGGVSRLRLWGVIE

Sequences:

>Translated_336_residues
MAMPTLDPNAPDFTRRYPNLADPRLGAEATFATDEFFAPKDRMLNPEPAVFIPGKYDDHGKWMDGWETRRRRNGGYDHCI
VRLARPGVVKGVDIDTSHFTGNFPPAASIEAAYLPDGEPTDATQWTEIVPSTTLQGNSHAYVAVASTQAFTHLRVNIFPD
GGIARLRVYGQPQVDWKGADRTKLFDLAAMENGAYVVEANNEHFGPASRMLMPGRGVNMGDGWETRRRREPGNDWCVIAL
ANPGRIRKIEVDTAHFKGNFADRVSIQAARVVGGTDSSLKTQAMFWQTLLPEQKLQMDLQHYYEAEIADLGIVTHVRFNM
FPDGGVSRLRLWGVIE
>Mature_335_residues
AMPTLDPNAPDFTRRYPNLADPRLGAEATFATDEFFAPKDRMLNPEPAVFIPGKYDDHGKWMDGWETRRRRNGGYDHCIV
RLARPGVVKGVDIDTSHFTGNFPPAASIEAAYLPDGEPTDATQWTEIVPSTTLQGNSHAYVAVASTQAFTHLRVNIFPDG
GIARLRVYGQPQVDWKGADRTKLFDLAAMENGAYVVEANNEHFGPASRMLMPGRGVNMGDGWETRRRREPGNDWCVIALA
NPGRIRKIEVDTAHFKGNFADRVSIQAARVVGGTDSSLKTQAMFWQTLLPEQKLQMDLQHYYEAEIADLGIVTHVRFNMF
PDGGVSRLRLWGVIE

Specific function: Unknown

COG id: COG4266

COG function: function code F; Allantoicase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the allantoicase family

Homologues:

Organism=Homo sapiens, GI144953901, Length=364, Percent_Identity=37.0879120879121, Blast_Score=238, Evalue=5e-63,
Organism=Saccharomyces cerevisiae, GI6322220, Length=329, Percent_Identity=37.0820668693009, Blast_Score=207, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALLC_RALPJ (B2UG65)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001901024.1
- ProteinModelPortal:   B2UG65
- SMR:   B2UG65
- GeneID:   6288253
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_3472
- HOGENOM:   HBG480577
- OMA:   NSHHYHE
- ProtClustDB:   PRK13257
- HAMAP:   MF_00813
- InterPro:   IPR005164
- InterPro:   IPR015908
- InterPro:   IPR008979
- PANTHER:   PTHR12045
- PIRSF:   PIRSF016516
- TIGRFAMs:   TIGR02961

Pfam domain/function: PF03561 Allantoicase; SSF49785 Gal_bind_like

EC number: =3.5.3.4

Molecular weight: Translated: 37504; Mature: 37372

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMPTLDPNAPDFTRRYPNLADPRLGAEATFATDEFFAPKDRMLNPEPAVFIPGKYDDHG
CCCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCCEEECCCCCCCC
KWMDGWETRRRRNGGYDHCIVRLARPGVVKGVDIDTSHFTGNFPPAASIEAAYLPDGEPT
CCCCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
DATQWTEIVPSTTLQGNSHAYVAVASTQAFTHLRVNIFPDGGIARLRVYGQPQVDWKGAD
CCCHHHHHCCCCEECCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCC
RTKLFDLAAMENGAYVVEANNEHFGPASRMLMPGRGVNMGDGWETRRRREPGNDWCVIAL
CCEEEEEEEECCCEEEEECCCCCCCCHHHEEECCCCCCCCCCCHHHHCCCCCCCEEEEEE
ANPGRIRKIEVDTAHFKGNFADRVSIQAARVVGGTDSSLKTQAMFWQTLLPEQKLQMDLQ
CCCCCEEEEEEECCEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHH
HYYEAEIADLGIVTHVRFNMFPDGGVSRLRLWGVIE
HHHHHHHHHCEEEEEEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure 
AMPTLDPNAPDFTRRYPNLADPRLGAEATFATDEFFAPKDRMLNPEPAVFIPGKYDDHG
CCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCCEEECCCCCCCC
KWMDGWETRRRRNGGYDHCIVRLARPGVVKGVDIDTSHFTGNFPPAASIEAAYLPDGEPT
CCCCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
DATQWTEIVPSTTLQGNSHAYVAVASTQAFTHLRVNIFPDGGIARLRVYGQPQVDWKGAD
CCCHHHHHCCCCEECCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCC
RTKLFDLAAMENGAYVVEANNEHFGPASRMLMPGRGVNMGDGWETRRRREPGNDWCVIAL
CCEEEEEEEECCCEEEEECCCCCCCCHHHEEECCCCCCCCCCCHHHHCCCCCCCEEEEEE
ANPGRIRKIEVDTAHFKGNFADRVSIQAARVVGGTDSSLKTQAMFWQTLLPEQKLQMDLQ
CCCCCEEEEEEECCEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHH
HYYEAEIADLGIVTHVRFNMFPDGGVSRLRLWGVIE
HHHHHHHHHCEEEEEEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA