| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
Click here to switch to the map view.
The map label for this gene is sbcB [H]
Identifier: 187930471
GI number: 187930471
Start: 3569172
End: 3570611
Strand: Reverse
Name: sbcB [H]
Synonym: Rpic_3405
Alternate gene names: 187930471
Gene position: 3570611-3569172 (Counterclockwise)
Preceding gene: 187930473
Following gene: 187930468
Centisome position: 90.57
GC content: 64.86
Gene sequence:
>1440_bases TTGCCTGTCACTCCCACCTTTCTCTGGCACGACTACGAAACCTTCGGCGCCGTGCCGCGCCGTGATCGCCCGGCGCAGTT TGCGGGCATCCGCACCGATGCCGAGCTGAACGAGATTGGCGAGCCGGTCGAACTGTTCTGCCAGCCTTCCAACGACTGGC TGCCCGATCCGGTGTCGTGCCTCATCACCGGCATCACGCCGCAGCAGTGCGCCCGGCAAGGCATTCCGGAATACCGTTTC GCGCAGGCCATCGAGCGCGAACTGGGCACGCCCGGCACCATCGGCGTAGGCTACAACACCATCCGCTTCGACGACGAAGT CACACGCCACCTGTTCTGGCGCAACCTGATCGACCCATACGCCCGCGAGTGGCAGAACGAATGCGGGCGGTGGGATCTGC TCGACGTGGTGCGCACCACGTGGGCCCTGCGCCCGGAGGGCATTCAATGGCCCACCCATGAAGACGGCCGGCCGAGCTTC AAACTGGAGCATCTGTCCAAGGCCAACGGCCTGGTGCATGAGGCGGCGCACGATGCGGTGTCGGATGTGCGCGCGACGAT TGCGCTGGCGCGCCTCATCCGCAATGCGCAGCCGCGCCTGTTCGATTTCTGCCTGGCGCTGCGCAAGAAAGACCGCGTGG TGGCCGAGATCGGCGATGCGCCGCGGCCGTTGCTGCACATCTCCGGGATGTACGGCGTGGAGCGCGGCTGCATGGCCGTG GTGTGGCCGCTGGGTGGTCATCCGGCCAACAAGAACGAACTGATCGTGTGGGACTTGGCGTTCGACCCGTCCGAGCTGTT CCACATGGACGTCGCCACGATTCGCGAACGCATGTTCACGCGCACGGCCGATCTGGCCGAAGGCACCACGCGGCTGCCGA TCAAGTCGATCCACATCAACAAGTCACCCATCGTCATCAGCAACATGAAGACGCTGCAACCCGCGCAGGCAGAACGCTGG GGCATCGACTTCGCCATGATCGAACGCCACGCCGCCATCGCCCAAGGCGCACCCGACATGCGGGAAACGTGGCGCCAGGT GTACGCCCGAGAACTGGAGCCGATTGAAGACGTCGACCAGAACCTCTACGGCGGATTCGTCGGCAACGACGATCGCCGCC TGCTCAACGAGCTGCGCACGCTCAGCGGCGAACAGCTCGCGCGCCTGCATGCGGAGTTTGCCGATGCGCGTCTGCCGGAG CTGCTGTTCCGCTACCGCGCACGCAACTTTCCCGATACGTTGAACGAAGAGGAATACGAGCGGTGGGAGCAATTGCGCGC CGAGCGCCTGTTCGAAGGCCGCGATGGCTACATGACCTTCGAGACCTTCGGCGAGCGGCTTCAGCAATTGGGCGCGGAAG CCGCAGAGAACGGCGACACGCGTGCGCAGACCATCCTGCAGGACCTGTACGACTACGCACAGCAGATCGTGCCGGGCTGA
Upstream 100 bases:
>100_bases ACGGCGTTAGCTTACTCTCGCGCCACCCCGGGTTTGCGCGGCCCTGGCGGCAGGCTGTTAGCATGCCGGCATCTTCAGTG TTTTCCAGCGAGCCGCTGCC
Downstream 100 bases:
>100_bases CGAGTCAGACGCGCACAAAGAAAAACGGAGGCCGAAGCCTCCGTTTTTTCATGGCGATGCTGAATGCTTGGCGCCGATCA GGCTGCCTGCTGTGCCGCAG
Product: exonuclease I
Products: NA
Alternate protein names: Exonuclease I; DNA deoxyribophosphodiesterase; dRPase [H]
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MPVTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQCARQGIPEYRF AQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSF KLEHLSKANGLVHEAAHDAVSDVRATIALARLIRNAQPRLFDFCLALRKKDRVVAEIGDAPRPLLHISGMYGVERGCMAV VWPLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHINKSPIVISNMKTLQPAQAERW GIDFAMIERHAAIAQGAPDMRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPE LLFRYRARNFPDTLNEEEYERWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVPG
Sequences:
>Translated_479_residues MPVTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQCARQGIPEYRF AQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSF KLEHLSKANGLVHEAAHDAVSDVRATIALARLIRNAQPRLFDFCLALRKKDRVVAEIGDAPRPLLHISGMYGVERGCMAV VWPLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHINKSPIVISNMKTLQPAQAERW GIDFAMIERHAAIAQGAPDMRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPE LLFRYRARNFPDTLNEEEYERWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVPG >Mature_478_residues PVTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQCARQGIPEYRFA QAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFK LEHLSKANGLVHEAAHDAVSDVRATIALARLIRNAQPRLFDFCLALRKKDRVVAEIGDAPRPLLHISGMYGVERGCMAVV WPLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHINKSPIVISNMKTLQPAQAERWG IDFAMIERHAAIAQGAPDMRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPEL LFRYRARNFPDTLNEEEYERWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVPG
Specific function: Also functions as a DNA deoxyribophosphodiesterase that releases deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase [H]
COG id: COG2925
COG function: function code L; Exonuclease I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788321, Length=477, Percent_Identity=45.9119496855346, Blast_Score=408, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013620 - InterPro: IPR013520 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF08411 Exonuc_X-T_C [H]
EC number: =3.1.11.1 [H]
Molecular weight: Translated: 54891; Mature: 54759
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSC CCCCCCEEECCHHHHCCCCCCCCCCHHCCCCCCCHHHHCCCCEEEEECCCCCCCCCHHHH LITGITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPY HEECCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHH AREWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAV HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH SDVRATIALARLIRNAQPRLFDFCLALRKKDRVVAEIGDAPRPLLHISGMYGVERGCMAV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEECCHHCCCCCCEEE VWPLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHIN EECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC KSPIVISNMKTLQPAQAERWGIDFAMIERHAAIAQGAPDMRETWRQVYARELEPIEDVDQ CCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH NLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYE HHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH RWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVPG HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PVTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSC CCCCCEEECCHHHHCCCCCCCCCCHHCCCCCCCHHHHCCCCEEEEECCCCCCCCCHHHH LITGITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPY HEECCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHH AREWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAV HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH SDVRATIALARLIRNAQPRLFDFCLALRKKDRVVAEIGDAPRPLLHISGMYGVERGCMAV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEECCHHCCCCCCEEE VWPLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHIN EECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC KSPIVISNMKTLQPAQAERWGIDFAMIERHAAIAQGAPDMRETWRQVYARELEPIEDVDQ CCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH NLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYE HHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH RWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVPG HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3539937; 9097040; 9278503; 1329027 [H]