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The map label for this gene is ydeR [H]

Identifier: 187930370

GI number: 187930370

Start: 3440535

End: 3441794

Strand: Reverse

Name: ydeR [H]

Synonym: Rpic_3303

Alternate gene names: 187930370

Gene position: 3441794-3440535 (Counterclockwise)

Preceding gene: 187930372

Following gene: 187930369

Centisome position: 87.3

GC content: 69.29

Gene sequence:

>1260_bases
ATGACCACCGAAGCCCCTGCCGTCGCCGTTTCCAACCCGTCGCCCGCCGACGCGCTCCCCCGCGGTGCCACGCCGTTGTT
TGCAGCCGCCGTCGGGCTCATCGTCATCAACCTGTTCGGCATCCAGCCGCTTGTCGCCGAGATCGCCGCAAGTATCGGCT
GGACCACCGCCGCCACCGGGCTGCTGGTGACTGCCACACTCGTCGGCTACGGCATCGGCCTGTTGCTGCTGATGCCGCTG
ACCGATTTGCAGGACAACCGCGCGCTGGCCTCGCGCACGCTGTGGGGCGCGGTGGCTTCGCTGGCGCTGACCACCGTAGC
GCACAGCGGCCGGGTGCTGATGCTGGCCGCCTTCGCCATCGGCCTTACGTCGACGGTCATTCAGATGCTGATTGCGCTGG
CAGGGCGCCTGGCCGCAGACCACCGGCGCGGGCGCGTGCTCGGCGACATCATGATCGGCCTGAACCTGGGCATCCTGCTG
TCGCGCCCGGCGGCCAGCCTGATCGCGGCGCAATGGGGCTGGCGTGCGTTCTACGGCGCATCTGCGGTGGCGATTGCCGT
GCTGGCCGTCCTTCTGCCGCGTGTGATGCCGACCTTCGTGCCGCCGCGTGCGCTGTCGTACGGTGCGTTGCTCAAGTCGT
ATGGCCATCTTCTGCGCACCGAACCGGTATTGCGTCGCCGCGCTGCCACCCAAGCTTTGCTGATGGCGGCCTTCACGCTG
TTCTGGACCGCTGTTGCACTGCGGCTGGCGGCCGCGCCGTTCCATCTTTCGCAGAACGGCATCGGCATCTTTGCGCTGTG
CGGCGCGGCCGGCGTCGTGGCGGCGCCCATCGCCGGACGGCTGGCGGATCGCGGCTTGGTGCGCGTTGGTACGCTGCTCG
CGCATGGCAGTGCGGCGGCGGGTCTGCTGTTGGCGCTGGCTTCGGCGCTGCTGCCAGACCTGAGCGTCCCTGTCATGTTG
GTGATGCTGGCCGCCGCAGCGTTGTTGCTGGACTTTGGCGCCATCGGCGACCAGGCGCTCGGCCGCTATATGGTCAACGC
GTTGCCGCCCGAGGTCCGGGGGCGCGTGAACGGCCTGTACACCGGGGCGTTCTTCTTTGGTGCGGCTGCAGGCGGCGGTT
TGGCCGGTGCGGCCTGGTTGCGCGCCGGCTGGATCGGCGTATCGGTTCTCGCGCTCGGGTTTGTGGTGGCCGCTGCGCTC
GTTTTCGTATGGCCCACCAGTGCGCAGCGTGCCATCGGCGCCACACCGCGCCGCTGCTGA

Upstream 100 bases:

>100_bases
TATTTGCGCACTTATGGAAACAATATGGCGCCAGAGGCTACCTTAATCTGCGCGAATCGGCTGGCTAGGATGGGGTCTCC
GATTCTTCGTCCCCTTCATC

Downstream 100 bases:

>100_bases
CCAACTGGCTCATCGCCAGACTGGCGGCGCGCTTGACGCTTGCAAGACAGGCCGCTATAGTGCCAGATTCGAGTTTTTGG
CTTCTGGTTTCGCGCGTCCA

Product: major facilitator superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTTEAPAVAVSNPSPADALPRGATPLFAAAVGLIVINLFGIQPLVAEIAASIGWTTAATGLLVTATLVGYGIGLLLLMPL
TDLQDNRALASRTLWGAVASLALTTVAHSGRVLMLAAFAIGLTSTVIQMLIALAGRLAADHRRGRVLGDIMIGLNLGILL
SRPAASLIAAQWGWRAFYGASAVAIAVLAVLLPRVMPTFVPPRALSYGALLKSYGHLLRTEPVLRRRAATQALLMAAFTL
FWTAVALRLAAAPFHLSQNGIGIFALCGAAGVVAAPIAGRLADRGLVRVGTLLAHGSAAAGLLLALASALLPDLSVPVML
VMLAAAALLLDFGAIGDQALGRYMVNALPPEVRGRVNGLYTGAFFFGAAAGGGLAGAAWLRAGWIGVSVLALGFVVAAAL
VFVWPTSAQRAIGATPRRC

Sequences:

>Translated_419_residues
MTTEAPAVAVSNPSPADALPRGATPLFAAAVGLIVINLFGIQPLVAEIAASIGWTTAATGLLVTATLVGYGIGLLLLMPL
TDLQDNRALASRTLWGAVASLALTTVAHSGRVLMLAAFAIGLTSTVIQMLIALAGRLAADHRRGRVLGDIMIGLNLGILL
SRPAASLIAAQWGWRAFYGASAVAIAVLAVLLPRVMPTFVPPRALSYGALLKSYGHLLRTEPVLRRRAATQALLMAAFTL
FWTAVALRLAAAPFHLSQNGIGIFALCGAAGVVAAPIAGRLADRGLVRVGTLLAHGSAAAGLLLALASALLPDLSVPVML
VMLAAAALLLDFGAIGDQALGRYMVNALPPEVRGRVNGLYTGAFFFGAAAGGGLAGAAWLRAGWIGVSVLALGFVVAAAL
VFVWPTSAQRAIGATPRRC
>Mature_418_residues
TTEAPAVAVSNPSPADALPRGATPLFAAAVGLIVINLFGIQPLVAEIAASIGWTTAATGLLVTATLVGYGIGLLLLMPLT
DLQDNRALASRTLWGAVASLALTTVAHSGRVLMLAAFAIGLTSTVIQMLIALAGRLAADHRRGRVLGDIMIGLNLGILLS
RPAASLIAAQWGWRAFYGASAVAIAVLAVLLPRVMPTFVPPRALSYGALLKSYGHLLRTEPVLRRRAATQALLMAAFTLF
WTAVALRLAAAPFHLSQNGIGIFALCGAAGVVAAPIAGRLADRGLVRVGTLLAHGSAAAGLLLALASALLPDLSVPVMLV
MLAAAALLLDFGAIGDQALGRYMVNALPPEVRGRVNGLYTGAFFFGAAAGGGLAGAAWLRAGWIGVSVLALGFVVAAALV
FVWPTSAQRAIGATPRRC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=414, Percent_Identity=24.6376811594203, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42829; Mature: 42698

Theoretical pI: Translated: 11.87; Mature: 11.87

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEAPAVAVSNPSPADALPRGATPLFAAAVGLIVINLFGIQPLVAEIAASIGWTTAATG
CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
LLVTATLVGYGIGLLLLMPLTDLQDNRALASRTLWGAVASLALTTVAHSGRVLMLAAFAI
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GLTSTVIQMLIALAGRLAADHRRGRVLGDIMIGLNLGILLSRPAASLIAAQWGWRAFYGA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCCCHHHHHHHHCCHHHHHHH
SAVAIAVLAVLLPRVMPTFVPPRALSYGALLKSYGHLLRTEPVLRRRAATQALLMAAFTL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FWTAVALRLAAAPFHLSQNGIGIFALCGAAGVVAAPIAGRLADRGLVRVGTLLAHGSAAA
HHHHHHHHHHHCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHH
GLLLALASALLPDLSVPVMLVMLAAAALLLDFGAIGDQALGRYMVNALPPEVRGRVNGLY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHEE
TGAFFFGAAAGGGLAGAAWLRAGWIGVSVLALGFVVAAALVFVWPTSAQRAIGATPRRC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TTEAPAVAVSNPSPADALPRGATPLFAAAVGLIVINLFGIQPLVAEIAASIGWTTAATG
CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
LLVTATLVGYGIGLLLLMPLTDLQDNRALASRTLWGAVASLALTTVAHSGRVLMLAAFAI
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GLTSTVIQMLIALAGRLAADHRRGRVLGDIMIGLNLGILLSRPAASLIAAQWGWRAFYGA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCCCHHHHHHHHCCHHHHHHH
SAVAIAVLAVLLPRVMPTFVPPRALSYGALLKSYGHLLRTEPVLRRRAATQALLMAAFTL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FWTAVALRLAAAPFHLSQNGIGIFALCGAAGVVAAPIAGRLADRGLVRVGTLLAHGSAAA
HHHHHHHHHHHCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHH
GLLLALASALLPDLSVPVMLVMLAAAALLLDFGAIGDQALGRYMVNALPPEVRGRVNGLY
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHEE
TGAFFFGAAAGGGLAGAAWLRAGWIGVSVLALGFVVAAALVFVWPTSAQRAIGATPRRC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]