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The map label for this gene is rpoE [H]

Identifier: 187930328

GI number: 187930328

Start: 3410869

End: 3411441

Strand: Reverse

Name: rpoE [H]

Synonym: Rpic_3261

Alternate gene names: 187930328

Gene position: 3411441-3410869 (Counterclockwise)

Preceding gene: 187930329

Following gene: 187930327

Centisome position: 86.53

GC content: 69.81

Gene sequence:

>573_bases
ATGTCCGATCTGGCCAGCCGGCTGATTGCGCTCACGCCACGCCTGCGCCGGCACGCGCGCGGGCTCGTGCGTGACGCCAG
CCGCGCCGACGACCTCGTCCAGGACACGCTGGAACGTGCCTGGCGTTATCGCTGGCGCTTCCAGTTGCGACCCAGGCTGG
GCCCGCTCGGCCAGATCGGCGCGAAAGGCGAGGGCGACGGATTGTTTGCCTGGCTGCTCACCATCATGCATCGGCTCCAC
CTCAACGCCGTGCGCAGGCCCGACCGAATCGAGCTGAGCGATGCGCCCCCCGAGATTCCCGTCGATGACGACCCCGGTTT
GCGCCGCGATCTGCTGCGCGCGCTGGCGACGCTGCCAGAAGATCAGCGCGCGGTATTGCTACTCGTCGGCCTGGAGCAGT
TCGCCTACAAGGAAGCCGCCGATGTGCTGGGCGTGCCGATCGGCACGGTGATGTCGCGGCTGTCGCGGGCGCGTGAGCGG
ATGCGCGCGGCGCTCGACGGGGCGCCAGCCGCATCGGCTGCATTTGCGGCATCCGGCGATGGCGGCAGCGCAACGCTGCA
CCGCGTGAAGTGA

Upstream 100 bases:

>100_bases
TGGACCAAGGACAAGATGCCGGGCGACCAGACTGGCGACGGCTTCATGAACGTTTGGCACGTCGCCAAGCCGTAAGCACG
CCGCCCTCGCTCGCGCCCCT

Downstream 100 bases:

>100_bases
GGCTCGCCATGTCCTCCAATTCCATTCATATCGACGAACTCCATGCGTATGCCGACGGCCGCTTGCCCGCGGCGCGCCGT
GCTGCCGTGGAGGCCTATCT

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSDLASRLIALTPRLRRHARGLVRDASRADDLVQDTLERAWRYRWRFQLRPRLGPLGQIGAKGEGDGLFAWLLTIMHRLH
LNAVRRPDRIELSDAPPEIPVDDDPGLRRDLLRALATLPEDQRAVLLLVGLEQFAYKEAADVLGVPIGTVMSRLSRARER
MRAALDGAPAASAAFAASGDGGSATLHRVK

Sequences:

>Translated_190_residues
MSDLASRLIALTPRLRRHARGLVRDASRADDLVQDTLERAWRYRWRFQLRPRLGPLGQIGAKGEGDGLFAWLLTIMHRLH
LNAVRRPDRIELSDAPPEIPVDDDPGLRRDLLRALATLPEDQRAVLLLVGLEQFAYKEAADVLGVPIGTVMSRLSRARER
MRAALDGAPAASAAFAASGDGGSATLHRVK
>Mature_189_residues
SDLASRLIALTPRLRRHARGLVRDASRADDLVQDTLERAWRYRWRFQLRPRLGPLGQIGAKGEGDGLFAWLLTIMHRLHL
NAVRRPDRIELSDAPPEIPVDDDPGLRRDLLRALATLPEDQRAVLLLVGLEQFAYKEAADVLGVPIGTVMSRLSRARERM
RAALDGAPAASAAFAASGDGGSATLHRVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20981; Mature: 20850

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLASRLIALTPRLRRHARGLVRDASRADDLVQDTLERAWRYRWRFQLRPRLGPLGQIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
AKGEGDGLFAWLLTIMHRLHLNAVRRPDRIELSDAPPEIPVDDDPGLRRDLLRALATLPE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC
DQRAVLLLVGLEQFAYKEAADVLGVPIGTVMSRLSRARERMRAALDGAPAASAAFAASGD
CCCCEEHEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
GGSATLHRVK
CCCCCCCCCC
>Mature Secondary Structure 
SDLASRLIALTPRLRRHARGLVRDASRADDLVQDTLERAWRYRWRFQLRPRLGPLGQIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
AKGEGDGLFAWLLTIMHRLHLNAVRRPDRIELSDAPPEIPVDDDPGLRRDLLRALATLPE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC
DQRAVLLLVGLEQFAYKEAADVLGVPIGTVMSRLSRARERMRAALDGAPAASAAFAASGD
CCCCEEHEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
GGSATLHRVK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]