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The map label for this gene is 187930327

Identifier: 187930327

GI number: 187930327

Start: 3410000

End: 3410860

Strand: Reverse

Name: 187930327

Synonym: Rpic_3260

Alternate gene names: NA

Gene position: 3410860-3410000 (Counterclockwise)

Preceding gene: 187930328

Following gene: 187930326

Centisome position: 86.51

GC content: 66.78

Gene sequence:

>861_bases
ATGTCCTCCAATTCCATTCATATCGACGAACTCCATGCGTATGCCGACGGCCGCTTGCCCGCGGCGCGCCGTGCTGCCGT
GGAGGCCTATCTTGCCGCGCACCCCGGCGCCGCGGCTGAAGTTGCGGCTTGGCGCGAGACGGATGCGCAATTGCACCGCG
CGCTCGATCCGCTGCTGAACGAACCGGTGCCGCAGCGTCGCATTCCGGCAGCGATCCTTGCGGTAGCACGTCGCCCCACG
GCCAGCGGCTTTGGCGCCATGCGCGGATGGAGCGTGGTGGCGCTGAGTGTGGCGTGCCTAGCCGTCGGGTCCGGGGCCGG
CTGGCTGAGTCGAGGTGCCGTTGAGCGCACCATGCCCATGCAACGGTTCGCCAACGATGCACTCGTATCGCACGTCGTCT
TTTCTCCGGAGTCGAAACACATCGTGGAAGTGCCGGCCGACGAGGAGGCGCATCTGGTCACATGGTTGTCGCGTCGGCTC
GACGCACAGCTGCACGTGCCTGATCTGACATCGCTGGGCTACCGGCTCATCGGCGGGCGCCAGACGGTGGTGGCAGATGC
GCCGACGGCCATGCTGATGTACGAGGGCCCCGGGGGCACGCGTATCTCCGTACAGTTGCGGCGCATGCCAAACAACCGCG
ATACCGGCTTCCGGCTGGAGACGCTCGCGCCCGACAACCGTGTGCTGCAAGCGATTCATCCGGCGGTCGATCATCCGCCG
CCGATGGCGTTCTACTGGGCGGATCACGGCCTCGGGTTTGCGGTCGCCGGCCCGCTGGGGCGGACGCAGTTACTGGAAGT
GGCGCAAGCCGTCTATCGGCAGTACAGCGAATTCACCGGGCCAGCGCCCCGCAAGGAATAG

Upstream 100 bases:

>100_bases
TGCGCGCGGCGCTCGACGGGGCGCCAGCCGCATCGGCTGCATTTGCGGCATCCGGCGATGGCGGCAGCGCAACGCTGCAC
CGCGTGAAGTGAGGCTCGCC

Downstream 100 bases:

>100_bases
CGCCACATCATTTTTTGCCGCGCGCTGTCAGGTCGACAGCGCGAGCACGACCAACGCACATGGGACAGCGTTCCCGCACA
ACGAGGACCACGAATCATGC

Product: putative transmembrane anti-sigma factor

Products: NA

Alternate protein names: Transmembrane Transcriptional Regulator; Anti-Sigma Factor; Transmembrane Protein; Transmembrane Regulator; PrtR Transmembrane Transcriptional Regulator; Transcriptional Regulator; Transmembrane Regulator PrtR; Transmembrane Transcription Regulator

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSSNSIHIDELHAYADGRLPAARRAAVEAYLAAHPGAAAEVAAWRETDAQLHRALDPLLNEPVPQRRIPAAILAVARRPT
ASGFGAMRGWSVVALSVACLAVGSGAGWLSRGAVERTMPMQRFANDALVSHVVFSPESKHIVEVPADEEAHLVTWLSRRL
DAQLHVPDLTSLGYRLIGGRQTVVADAPTAMLMYEGPGGTRISVQLRRMPNNRDTGFRLETLAPDNRVLQAIHPAVDHPP
PMAFYWADHGLGFAVAGPLGRTQLLEVAQAVYRQYSEFTGPAPRKE

Sequences:

>Translated_286_residues
MSSNSIHIDELHAYADGRLPAARRAAVEAYLAAHPGAAAEVAAWRETDAQLHRALDPLLNEPVPQRRIPAAILAVARRPT
ASGFGAMRGWSVVALSVACLAVGSGAGWLSRGAVERTMPMQRFANDALVSHVVFSPESKHIVEVPADEEAHLVTWLSRRL
DAQLHVPDLTSLGYRLIGGRQTVVADAPTAMLMYEGPGGTRISVQLRRMPNNRDTGFRLETLAPDNRVLQAIHPAVDHPP
PMAFYWADHGLGFAVAGPLGRTQLLEVAQAVYRQYSEFTGPAPRKE
>Mature_285_residues
SSNSIHIDELHAYADGRLPAARRAAVEAYLAAHPGAAAEVAAWRETDAQLHRALDPLLNEPVPQRRIPAAILAVARRPTA
SGFGAMRGWSVVALSVACLAVGSGAGWLSRGAVERTMPMQRFANDALVSHVVFSPESKHIVEVPADEEAHLVTWLSRRLD
AQLHVPDLTSLGYRLIGGRQTVVADAPTAMLMYEGPGGTRISVQLRRMPNNRDTGFRLETLAPDNRVLQAIHPAVDHPPP
MAFYWADHGLGFAVAGPLGRTQLLEVAQAVYRQYSEFTGPAPRKE

Specific function: Unknown

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31005; Mature: 30874

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNSIHIDELHAYADGRLPAARRAAVEAYLAAHPGAAAEVAAWRETDAQLHRALDPLLN
CCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
EPVPQRRIPAAILAVARRPTASGFGAMRGWSVVALSVACLAVGSGAGWLSRGAVERTMPM
CCCCCHHCCHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHH
QRFANDALVSHVVFSPESKHIVEVPADEEAHLVTWLSRRLDAQLHVPDLTSLGYRLIGGR
HHHHHHHHHHHHEECCCCCEEEECCCCCCHHHHHHHHHHCCCEECCCCHHHCCEEEECCC
QTVVADAPTAMLMYEGPGGTRISVQLRRMPNNRDTGFRLETLAPDNRVLQAIHPAVDHPP
EEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHCCCCC
PMAFYWADHGLGFAVAGPLGRTQLLEVAQAVYRQYSEFTGPAPRKE
CEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SSNSIHIDELHAYADGRLPAARRAAVEAYLAAHPGAAAEVAAWRETDAQLHRALDPLLN
CCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
EPVPQRRIPAAILAVARRPTASGFGAMRGWSVVALSVACLAVGSGAGWLSRGAVERTMPM
CCCCCHHCCHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHH
QRFANDALVSHVVFSPESKHIVEVPADEEAHLVTWLSRRLDAQLHVPDLTSLGYRLIGGR
HHHHHHHHHHHHEECCCCCEEEECCCCCCHHHHHHHHHHCCCEECCCCHHHCCEEEECCC
QTVVADAPTAMLMYEGPGGTRISVQLRRMPNNRDTGFRLETLAPDNRVLQAIHPAVDHPP
EEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHCCCCC
PMAFYWADHGLGFAVAGPLGRTQLLEVAQAVYRQYSEFTGPAPRKE
CEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA