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The map label for this gene is ybgI [C]

Identifier: 187930275

GI number: 187930275

Start: 3356063

End: 3356809

Strand: Reverse

Name: ybgI [C]

Synonym: Rpic_3208

Alternate gene names: 187930275

Gene position: 3356809-3356063 (Counterclockwise)

Preceding gene: 187930277

Following gene: 187930273

Centisome position: 85.14

GC content: 61.98

Gene sequence:

>747_bases
ATGGATCGAAAAGAACTTGAATTGTACTTGAACGACCTGTTGCAGGCGGCCCGTTTTCGGGACTATTGCCCCAATGGTCT
CCAGGTACAGGGGCGCGACACCATTGCGCATATCGTGACGGGGGTGACCGCTAGCCTGGCGCTGATCGAAGCCGCCATCG
AAGCGCGTGCCGACGCCATCCTCGTGCATCACGGTTACTTCTGGAAGGGAGAGGATGGCCGTGTCGTAGGCCAGAAGCAT
GCGCGCTTGAAGCAACTTCTGGCGCACGATCTCAACATGTTCGCGTATCACTTGCCGCTCGATGCGCATCCTGGGCTCGG
CAACAACGCGCAACTGGGTGCGTTGCTGGGCATCTCGCCTCAGGGCAGGTTCGGCGACGACGAACTTGGCTGGATTGGTA
CGCTTGCCGAAGCAACCACGCTGGGCGATTTCGCGCAGACGGTGTCGGCAAAGCTGAACCGGGAGCCGCTTGTGATCGGC
GAGGGGGATCGCCCGGTGCGCACAATCGGCTGGTGCACAGGCGGTGCCCAAGGCTGGTTTGATGCCGCCGTGGCCGCCGG
TGTAGACGTGTATCTGAGCGGTGAAGCGTCGGAGCAGACCACGCATCTTGCGCGTGAATCGGGTGTTGCCTATATCGGTG
CGGGTCACCACGCCACCGAGCGCGGTGGCGTTCGGGCGCTCGGCACTCATCTGGCCGAGCGCTTCGGTGTGCGTCACACC
TTCATCGATATCCCGAATCCGGTGTGA

Upstream 100 bases:

>100_bases
CTTGAGCGTGGCGATCACAAACCAGACGGCCAGGACGACCGTGACGGCTTGCGCAAAAAACAGCCAAAAGCGGCGCAACA
TAGAGCGAAGTTGAGTCCAA

Downstream 100 bases:

>100_bases
GTCGACGTCCGATTACGGCTTGTTCTTCAGGCTGTCGCGAATCTCGCGCAGCAGTTGGATGTCTTCTGGTGTTTCGGCGG
GGGCAGCCGGCGGGTTGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MDRKELELYLNDLLQAARFRDYCPNGLQVQGRDTIAHIVTGVTASLALIEAAIEARADAILVHHGYFWKGEDGRVVGQKH
ARLKQLLAHDLNMFAYHLPLDAHPGLGNNAQLGALLGISPQGRFGDDELGWIGTLAEATTLGDFAQTVSAKLNREPLVIG
EGDRPVRTIGWCTGGAQGWFDAAVAAGVDVYLSGEASEQTTHLARESGVAYIGAGHHATERGGVRALGTHLAERFGVRHT
FIDIPNPV

Sequences:

>Translated_248_residues
MDRKELELYLNDLLQAARFRDYCPNGLQVQGRDTIAHIVTGVTASLALIEAAIEARADAILVHHGYFWKGEDGRVVGQKH
ARLKQLLAHDLNMFAYHLPLDAHPGLGNNAQLGALLGISPQGRFGDDELGWIGTLAEATTLGDFAQTVSAKLNREPLVIG
EGDRPVRTIGWCTGGAQGWFDAAVAAGVDVYLSGEASEQTTHLARESGVAYIGAGHHATERGGVRALGTHLAERFGVRHT
FIDIPNPV
>Mature_248_residues
MDRKELELYLNDLLQAARFRDYCPNGLQVQGRDTIAHIVTGVTASLALIEAAIEARADAILVHHGYFWKGEDGRVVGQKH
ARLKQLLAHDLNMFAYHLPLDAHPGLGNNAQLGALLGISPQGRFGDDELGWIGTLAEATTLGDFAQTVSAKLNREPLVIG
EGDRPVRTIGWCTGGAQGWFDAAVAAGVDVYLSGEASEQTTHLARESGVAYIGAGHHATERGGVRALGTHLAERFGVRHT
FIDIPNPV

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=248, Percent_Identity=52.0161290322581, Blast_Score=251, Evalue=4e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 26658; Mature: 26658

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKELELYLNDLLQAARFRDYCPNGLQVQGRDTIAHIVTGVTASLALIEAAIEARADAI
CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LVHHGYFWKGEDGRVVGQKHARLKQLLAHDLNMFAYHLPLDAHPGLGNNAQLGALLGISP
EEECCEEEECCCCCEECHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEEEECCC
QGRFGDDELGWIGTLAEATTLGDFAQTVSAKLNREPLVIGEGDRPVRTIGWCTGGAQGWF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEECCCCCHHH
DAAVAAGVDVYLSGEASEQTTHLARESGVAYIGAGHHATERGGVRALGTHLAERFGVRHT
HHHHHCCEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE
FIDIPNPV
EEECCCCC
>Mature Secondary Structure
MDRKELELYLNDLLQAARFRDYCPNGLQVQGRDTIAHIVTGVTASLALIEAAIEARADAI
CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LVHHGYFWKGEDGRVVGQKHARLKQLLAHDLNMFAYHLPLDAHPGLGNNAQLGALLGISP
EEECCEEEECCCCCEECHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEEEECCC
QGRFGDDELGWIGTLAEATTLGDFAQTVSAKLNREPLVIGEGDRPVRTIGWCTGGAQGWF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEECCCCCHHH
DAAVAAGVDVYLSGEASEQTTHLARESGVAYIGAGHHATERGGVRALGTHLAERFGVRHT
HHHHHCCEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE
FIDIPNPV
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]