Click here to switch to the map view.

The map label for this gene is cyoD [H]

Identifier: 187930227

GI number: 187930227

Start: 3310957

End: 3311325

Strand: Reverse

Name: cyoD [H]

Synonym: Rpic_3160

Alternate gene names: 187930227

Gene position: 3311325-3310957 (Counterclockwise)

Preceding gene: 187930228

Following gene: 187930226

Centisome position: 83.99

GC content: 61.25

Gene sequence:

>369_bases
ATGGAACAGACCAACGCAACATCCGCCATCGCCCACGGCGAGGATCACGGTCATGCAGCCGGCGGCGCCGGCCATGCCAC
CGTCAAGGGCTACCTGATCGGCTTCGTGCTGGCGGTGATCCTGACGGCCATCCCGTTCAAGATGGTGATGGACGGCGGGT
ACTCGCACCAGACGGTGCTGGTGACGGTGATGGCCCTGGCGGTCGTGCAGATCGTCGTGCACCTGATCTATTTCCTGCAC
TTGGACGGCTCGTCCGCCCAGCGCTGGAACGTGATGGCTTTCCTGTTCACGCTGCTGATCCTGGCGATCGTCGTTGTCGG
CTCGCTGTGGGTCATGCATAACATGAACGCCAACATGATGACGATGTAA

Upstream 100 bases:

>100_bases
CCCAATCGACTCGACTGTCGTGCCTGAGCCTGTTCTGGCACTTCTTGGACGTGGTGTGGATCGGTGTGTTTACCGTCGTC
TATCTGCTGGGAGCGATGTA

Downstream 100 bases:

>100_bases
CGAGCCAGCCTGCTGCTGCATCGGAAGGGCGCCCCTGGTGGGCGCCTTTTCTTTTGCTCGAGCGGCCTTGAGCCCTGGGC
TTGCCGTGCCCCGGCTTTGT

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MEQTNATSAIAHGEDHGHAAGGAGHATVKGYLIGFVLAVILTAIPFKMVMDGGYSHQTVLVTVMALAVVQIVVHLIYFLH
LDGSSAQRWNVMAFLFTLLILAIVVVGSLWVMHNMNANMMTM

Sequences:

>Translated_122_residues
MEQTNATSAIAHGEDHGHAAGGAGHATVKGYLIGFVLAVILTAIPFKMVMDGGYSHQTVLVTVMALAVVQIVVHLIYFLH
LDGSSAQRWNVMAFLFTLLILAIVVVGSLWVMHNMNANMMTM
>Mature_122_residues
MEQTNATSAIAHGEDHGHAAGGAGHATVKGYLIGFVLAVILTAIPFKMVMDGGYSHQTVLVTVMALAVVQIVVHLIYFLH
LDGSSAQRWNVMAFLFTLLILAIVVVGSLWVMHNMNANMMTM

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=111, Percent_Identity=52.2522522522522, Blast_Score=120, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 13122; Mature: 13122

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
8.2 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
8.2 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTNATSAIAHGEDHGHAAGGAGHATVKGYLIGFVLAVILTAIPFKMVMDGGYSHQTVL
CCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VTVMALAVVQIVVHLIYFLHLDGSSAQRWNVMAFLFTLLILAIVVVGSLWVMHNMNANMM
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TM
CC
>Mature Secondary Structure
MEQTNATSAIAHGEDHGHAAGGAGHATVKGYLIGFVLAVILTAIPFKMVMDGGYSHQTVL
CCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VTVMALAVVQIVVHLIYFLHLDGSSAQRWNVMAFLFTLLILAIVVVGSLWVMHNMNANMM
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TM
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]