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The map label for this gene is araH [H]

Identifier: 187930063

GI number: 187930063

Start: 3121936

End: 3122943

Strand: Reverse

Name: araH [H]

Synonym: Rpic_2995

Alternate gene names: 187930063

Gene position: 3122943-3121936 (Counterclockwise)

Preceding gene: 187930064

Following gene: 187930062

Centisome position: 79.21

GC content: 62.8

Gene sequence:

>1008_bases
ATGTCCCAGTCTCAACCCCTGCAACATTCCGATGCCGTCGCCGCATCGGCACGCTCTGCCATGAACAAGACGCGCCTGCT
TCGCCTGCTGGACGATTTCAGCCTGCCGCTGATCTTCGCCATTCTCTTTGCCGCGCTGTCGTTCTCGGTCGAGTATTTCT
TCTCGTGGCAGAACATGGTCGGCCTTGCGCTGTCGGTCTCGCAGATCGGCATGGTCGCCTGCACGATGATGTTCTGTCTG
GCGTCGCGTGATTTCGATCTGTCGATCGGCTCCACGGTGGCGTTTGCCGGCGTGCTCTGCGCGATGATCATCAATGCCAC
CGGCAGCATCGCACTCGGCATTGGCGCCAGCCTGGTGGCAGGCGCGATCATCGGCGGCATCAATGGTTTCGTGATCGCCA
AGCTGAAGATCAATGCGCTGATCACCACGCTGGCCACGATGGAAATCGTGCGCGGCCTCGCCTTCATCGCCTCGCATGGG
CAGGCGGTGGGCGTGTCCGACATGGATTTCTTCGACCTCGGCAACACCATCTTTTTTGGTGTGCCGACGCCGGTGTGGGT
CGCGGCGCTGTGCTTCGTGGTGTTTGGTGTCCTGCTCAACAAGACAATCTACGGCCGCAATACGCTGGCGATCGGCGGCA
ACCCTGAAGCGGCGCGGCTGGCCGGCGTGAACGTCAACATGACGCGCATCGTCATCTTCCTGATCCAGGGCGTGATTGCC
GCGCTGGCCGGTGTGATTCTGGCGGCGCGCATCACCAGCGGCCAGCCGAATGCGGCGCAAGGCTTTGAGCTGAACGTGAT
CTCGGCCTGCGTGCTGGGCGGCGTGTCGCTGCTGGGCGGCCGCGCGACCATCAGCGGGGTGCTGGTCGGCGTGCTGATCA
TGGGCACCGTGCAGAACGCGATGAACCTGCTGAACATCGACGCGTTCTATCAGTACCTCGTGCGCGGCGCGATTCTGCTG
GCAGCGGTGCTGGTCGACCAGTTGAAGAACCGCGGCGGCCGTGAGTGA

Upstream 100 bases:

>100_bases
ACGAGCAAGCCGTGCTCAAGCTCGCACTGCGACCTGAATCTGCGCCGCTGCCATCTGCACCGCAGCCGCCGCTGGCTGCC
TGAGAACCCCGGAGTCCAAG

Downstream 100 bases:

>100_bases
GGCCGTGCAGATGACAACCGCAACCACGCTGTCCGATCTGCGCTGTACGCTGGGCGAAGGCATTGTCTGGGACAACGCCC
TGCGCGTGCTCTGGTGGACC

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSQSQPLQHSDAVAASARSAMNKTRLLRLLDDFSLPLIFAILFAALSFSVEYFFSWQNMVGLALSVSQIGMVACTMMFCL
ASRDFDLSIGSTVAFAGVLCAMIINATGSIALGIGASLVAGAIIGGINGFVIAKLKINALITTLATMEIVRGLAFIASHG
QAVGVSDMDFFDLGNTIFFGVPTPVWVAALCFVVFGVLLNKTIYGRNTLAIGGNPEAARLAGVNVNMTRIVIFLIQGVIA
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLLGGRATISGVLVGVLIMGTVQNAMNLLNIDAFYQYLVRGAILL
AAVLVDQLKNRGGRE

Sequences:

>Translated_335_residues
MSQSQPLQHSDAVAASARSAMNKTRLLRLLDDFSLPLIFAILFAALSFSVEYFFSWQNMVGLALSVSQIGMVACTMMFCL
ASRDFDLSIGSTVAFAGVLCAMIINATGSIALGIGASLVAGAIIGGINGFVIAKLKINALITTLATMEIVRGLAFIASHG
QAVGVSDMDFFDLGNTIFFGVPTPVWVAALCFVVFGVLLNKTIYGRNTLAIGGNPEAARLAGVNVNMTRIVIFLIQGVIA
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLLGGRATISGVLVGVLIMGTVQNAMNLLNIDAFYQYLVRGAILL
AAVLVDQLKNRGGRE
>Mature_334_residues
SQSQPLQHSDAVAASARSAMNKTRLLRLLDDFSLPLIFAILFAALSFSVEYFFSWQNMVGLALSVSQIGMVACTMMFCLA
SRDFDLSIGSTVAFAGVLCAMIINATGSIALGIGASLVAGAIIGGINGFVIAKLKINALITTLATMEIVRGLAFIASHGQ
AVGVSDMDFFDLGNTIFFGVPTPVWVAALCFVVFGVLLNKTIYGRNTLAIGGNPEAARLAGVNVNMTRIVIFLIQGVIAA
LAGVILAARITSGQPNAAQGFELNVISACVLGGVSLLGGRATISGVLVGVLIMGTVQNAMNLLNIDAFYQYLVRGAILLA
AVLVDQLKNRGGRE

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=58.957654723127, Blast_Score=346, Evalue=1e-96,
Organism=Escherichia coli, GI1790191, Length=296, Percent_Identity=36.4864864864865, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1788896, Length=327, Percent_Identity=32.4159021406728, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1790524, Length=309, Percent_Identity=31.3915857605178, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=45.4545454545455, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=34.3373493975904, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=33.8775510204082, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI87082395, Length=241, Percent_Identity=34.0248962655602, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787794, Length=262, Percent_Identity=29.3893129770992, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=242, Percent_Identity=30.5785123966942, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34926; Mature: 34795

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSQPLQHSDAVAASARSAMNKTRLLRLLDDFSLPLIFAILFAALSFSVEYFFSWQNMV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLALSVSQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCAMIINATGSIALGIGASLVA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
GAIIGGINGFVIAKLKINALITTLATMEIVRGLAFIASHGQAVGVSDMDFFDLGNTIFFG
HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEC
VPTPVWVAALCFVVFGVLLNKTIYGRNTLAIGGNPEAARLAGVNVNMTRIVIFLIQGVIA
CCCHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHH
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLLGGRATISGVLVGVLIMGTVQNA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MNLLNIDAFYQYLVRGAILLAAVLVDQLKNRGGRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SQSQPLQHSDAVAASARSAMNKTRLLRLLDDFSLPLIFAILFAALSFSVEYFFSWQNMV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLALSVSQIGMVACTMMFCLASRDFDLSIGSTVAFAGVLCAMIINATGSIALGIGASLVA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
GAIIGGINGFVIAKLKINALITTLATMEIVRGLAFIASHGQAVGVSDMDFFDLGNTIFFG
HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEC
VPTPVWVAALCFVVFGVLLNKTIYGRNTLAIGGNPEAARLAGVNVNMTRIVIFLIQGVIA
CCCHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHH
ALAGVILAARITSGQPNAAQGFELNVISACVLGGVSLLGGRATISGVLVGVLIMGTVQNA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MNLLNIDAFYQYLVRGAILLAAVLVDQLKNRGGRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]