| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is dps [C]
Identifier: 187929991
GI number: 187929991
Start: 3037818
End: 3038318
Strand: Reverse
Name: dps [C]
Synonym: Rpic_2923
Alternate gene names: 187929991
Gene position: 3038318-3037818 (Counterclockwise)
Preceding gene: 187929992
Following gene: 187929990
Centisome position: 77.06
GC content: 62.28
Gene sequence:
>501_bases ATGGCAAAGAAGAACAGCGGCGCGACTGCCGCAGCCCAGATCAACATCGGCATTGCTGACAAGGATCGCAAGAAGATCGC CGACGGCCTGTCGCGCCTGCTGGCCGATACCTACTCGCTCTACCTGAAGACGCATTACTTCCACTGGAACGTCACCGGCC CGATGTTCAACACGCTGCACCTGATGTTCGAGACGCAGTACAACGAACTGTGGAATGCCGTCGACCCGGTGGCCGAGCGC ATCCGCGCGCTGGGTTATCCCGCGCCGGGCTCGTATTCGGAGTTCGCCAAGCTGTCGTCGATTCCGGAATCGAAGGGCAT TCCCGAGGCGATGGACATGGTGCGCGAGCTGGTGGCGGGCCACGAAGCCGTGACGCGTACCGCGCGCAGCCTGTTCCCCG ACGTCGACAAGGCCGCCGACGAACCGACCGCCGATCTGCTGACGCAACGCATGGACATTCACGAAAAGACCGCGTGGATG CTGCGCTCGCTTCTGGCTTAA
Upstream 100 bases:
>100_bases GCGAGGGGCAACCGAAAGAAGGCTGGAAGCACGCGCGGCCCGACGCTGAATCCAGCGGACGGCATCGCGTTTTTGCACAC CACTTCATAGGGGAATCCAG
Downstream 100 bases:
>100_bases GGCTGGCCTGAAGGCCGTTCGCCACGTTTGCGACAGGCGTTTCGGCAGCAGCGAATTGCGCCCCTCCCGCGAGCCCGTTG CGTTGCGGTTGGGGCGGCAT
Product: Ferritin Dps family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MAKKNSGATAAAQINIGIADKDRKKIADGLSRLLADTYSLYLKTHYFHWNVTGPMFNTLHLMFETQYNELWNAVDPVAER IRALGYPAPGSYSEFAKLSSIPESKGIPEAMDMVRELVAGHEAVTRTARSLFPDVDKAADEPTADLLTQRMDIHEKTAWM LRSLLA
Sequences:
>Translated_166_residues MAKKNSGATAAAQINIGIADKDRKKIADGLSRLLADTYSLYLKTHYFHWNVTGPMFNTLHLMFETQYNELWNAVDPVAER IRALGYPAPGSYSEFAKLSSIPESKGIPEAMDMVRELVAGHEAVTRTARSLFPDVDKAADEPTADLLTQRMDIHEKTAWM LRSLLA >Mature_165_residues AKKNSGATAAAQINIGIADKDRKKIADGLSRLLADTYSLYLKTHYFHWNVTGPMFNTLHLMFETQYNELWNAVDPVAERI RALGYPAPGSYSEFAKLSSIPESKGIPEAMDMVRELVAGHEAVTRTARSLFPDVDKAADEPTADLLTQRMDIHEKTAWML RSLLA
Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 18512; Mature: 18381
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS00818 DPS_1 ; PS00819 DPS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKNSGATAAAQINIGIADKDRKKIADGLSRLLADTYSLYLKTHYFHWNVTGPMFNTLH CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHH LMFETQYNELWNAVDPVAERIRALGYPAPGSYSEFAKLSSIPESKGIPEAMDMVRELVAG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHC HEAVTRTARSLFPDVDKAADEPTADLLTQRMDIHEKTAWMLRSLLA HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure AKKNSGATAAAQINIGIADKDRKKIADGLSRLLADTYSLYLKTHYFHWNVTGPMFNTLH CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHH LMFETQYNELWNAVDPVAERIRALGYPAPGSYSEFAKLSSIPESKGIPEAMDMVRELVAG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHC HEAVTRTARSLFPDVDKAADEPTADLLTQRMDIHEKTAWMLRSLLA HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]