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The map label for this gene is hslR [H]

Identifier: 187929944

GI number: 187929944

Start: 2980679

End: 2981077

Strand: Reverse

Name: hslR [H]

Synonym: Rpic_2876

Alternate gene names: 187929944

Gene position: 2981077-2980679 (Counterclockwise)

Preceding gene: 187929945

Following gene: 187929942

Centisome position: 75.61

GC content: 65.16

Gene sequence:

>399_bases
ATGAAGGTGAGCACGGACGCGGCCGATCGCGTGCGTATCGACAAATGGCTGTGGGCGGCGCGCTTCTTCAAGACGCGTTC
GCAGGCGACGGACGCGGTGGAGCGCGGTCGCGTGCAGATCAACGATCAGGCGGTTCGCCCCGCCAAGGATGTCAAGATCG
GTGACCGCGTGCGGGTGCACGCGCATGAACAGCAGTGGGAAGTGGAAGTATTGGCGCTGGCGGAAGTGCGCGGCCCAGCT
TCGGTCGCCCAAACGCTCTACGCCGAGACGGACACCAGTCGCTTAAAACGCGAAGAGAACGCCGACAAGCGCCGGCTCTA
TCGGGAACCCGCCACACAAATTGCCGGCCGGCCGACCAAGCGCGACCGGCGGCGCATCGACAAACTCGGCGGCGAATGA

Upstream 100 bases:

>100_bases
ACATCGCGCTTGCGCATCTGCAGGGCTGGCCGCTCACGCTTACGCATCCGCACGTGCTGGAAGCCAGCCGCACGCGTGCG
CAGAGCAAGGGAGCGGCCGC

Downstream 100 bases:

>100_bases
CGCATTCCGCGCGAGTGTGTGCTAACTTGATACGCTCATCAAACCGCGCGGCATCTGCTCCATCTGCGCCGGCTTGATGA
TGTAGTGCTTGAAGAATGCC

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKVSTDAADRVRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVHAHEQQWEVEVLALAEVRGPA
SVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTKRDRRRIDKLGGE

Sequences:

>Translated_132_residues
MKVSTDAADRVRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVHAHEQQWEVEVLALAEVRGPA
SVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTKRDRRRIDKLGGE
>Mature_132_residues
MKVSTDAADRVRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVHAHEQQWEVEVLALAEVRGPA
SVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTKRDRRRIDKLGGE

Specific function: May play a important role in binding of nucleic acid. More specific for RNA [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=114, Percent_Identity=42.1052631578947, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15206; Mature: 15206

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSTDAADRVRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEE
AHEQQWEVEVLALAEVRGPASVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTK
ECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCHHHHHCCCCCH
RDRRRIDKLGGE
HHHHHHHHCCCC
>Mature Secondary Structure
MKVSTDAADRVRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEE
AHEQQWEVEVLALAEVRGPASVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTK
ECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCHHHHHCCCCCH
RDRRRIDKLGGE
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]