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The map label for this gene is ytfM [C]

Identifier: 187929669

GI number: 187929669

Start: 2711130

End: 2712917

Strand: Reverse

Name: ytfM [C]

Synonym: Rpic_2597

Alternate gene names: 187929669

Gene position: 2712917-2711130 (Counterclockwise)

Preceding gene: 187929675

Following gene: 187929668

Centisome position: 68.81

GC content: 64.04

Gene sequence:

>1788_bases
ATGACCGGCTCCAATCGACCATCGCGACCGTCACGACCACCACGCTTTCGTTTCCTGGGTTTGCCCGCCGCCGCGCTGGC
GGCAGGCTTTGTGCTGTCCCTCGCCTGTGCCGCGGCGCACGCTGAATACGACGTCAAGATCGATGCGCCGAAGTCCATTC
GCGACTTGCTGGAGCGCCATCTGGACCTGTCGCGCTACAAAGACCGCAAGGACATCACTGACGACCAGCTCCAGTACATG
GTCGAGACCATTGGCGACCAAGTCACCAAGCTGACGGCCACCGAAGGCTATTTCGTGCCGAAGGCGACCGCGAAGCTGGA
CGGCCCGCCGGACCACCGCGTGGTCAATGTGAAGGTCGAGCCCGGCCCGCGTACCACCATCGACACCGTGGCGCTCGACT
TTACCGGGGCCATCACGCAAGACGCCAAGCGCATCGACGAATTGAAAAAGTCGTGGAGCCTGCAGCACGGCATGGCCTTC
CGCCAGTCGGGCTGGGACAAGGCCAAGGACGACGGTCTGGCGGCGCTGCAGAGCAAACGTTATTACGCGGCCAGGCAGAC
ATCGTCGCAGGCGCGTGTCGATCCGGACGAAAACAAGGCAGACCTGTCGGTGGGCTATGACAGCGGTCCGGCTTACACGC
TGGGGCCACTGGAGGTGCAGGGCTTGTCGCGTTATCCGCTCAGCATCATCAACCACGTGAACCCGCTGCGCGTGGGTGAG
GATTACTCTGCTGATCGTCTGCAATCGCTGCAGGCCGCCATCCAGGGGCAGCCATATTTTTCCAATGCGATCGTCGACCT
GGGTGACGATCCGAAGAACCCGGTCAACGCGCCGGTGCGGGTGCGCGTGCGGGAGTACCCGCCCAATCGCATCACCGGCG
GTGTGGGTTACGGCACGGACACGGGCGCCTCGCTGGAAGGGCGCTATCAATATCTGAACCTGTTCAGCAAGGCGTGGGTG
CTCGACACGCAGGCCCGCATCGAACAGCGCCGTCAGTACCTGTTTGCCGGCGTGACCGTGCCGCCCGACGACAAGCAATA
CGTCAATAGCTTCTACACCAGCATGGACCGCACCGATACCTCGGGCACCGACACGCGCAGCTATCGTTCCGGCTTCAAGC
AGACGCGTGTGCGCGGCATCTATGAGACGTCGTTCACCGTTGATTTCTACTACGACGACCTGCGGCCCGACGGCGCCGAG
CGTCAGTTGAGCAAGGCGCTCGTCCCGGGTTTCGCGTGGACGCGCCGTGACGTGGACGACCCGCTGTTCCCGCGCCGCGG
CAACATCATCACCACGCAGATCGGCGCGGCAGTGAAAGGCGTGTTGACGGACCAATCGTTCGTGCGGTCGTACAGCCGCA
TCCGCCAGTTCGTGCCGGTGGGGCAGCGCGATATCTTCGTCGCGCGCGGTGAGTTGGGTGCGGTCATCACCGCTGGTTCC
GGCGACGGCGTGCCGGCCACGCTGCGCTTCCGCACGGGCGGCACACAGTCGGTGCGCGGCTACGACTTCCAGAGCATCGG
TAACGACGTCAACGGCAGCACGCTGCCGACCAAGTTCCTCGTCACTGGCGGGTTGGAATATCAACGCTGGTTTCTGCCGC
AATGGGGTGCCGCCGTGTTCTGGGATACCGGCACGGCCACCGACAACTGGTCGGAGCGCCGCTGGTTCAACGGTGTGGGT
GTCGGCGTGCGCTGGAAGAGTCCGGTCGGGCCGATCCAACTCGATATGGCCTATGGCATCCAGCAGAAGCAGTTCCGGCC
GAGCGTGTCGCTGGGCATCGCGTTCTGA

Upstream 100 bases:

>100_bases
CATTCGTTGCATTTGCCTGGGCACCCGCCGGGCCCGGTATGGTCAAATACGCCTTTCCTTTGATTCAGCCGGCCCGTGGG
GCGGCACCACGCTTGCCACG

Downstream 100 bases:

>100_bases
ATATGACGATGACCGATCCGCAAACGCCTGAATCCAATCCACCCGAAGCACAACACCCCAAGCGTCCCACGCGTGGCTGG
GGCTGCCGCACGCTGCGCTG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 595; Mature: 594

Protein sequence:

>595_residues
MTGSNRPSRPSRPPRFRFLGLPAAALAAGFVLSLACAAAHAEYDVKIDAPKSIRDLLERHLDLSRYKDRKDITDDQLQYM
VETIGDQVTKLTATEGYFVPKATAKLDGPPDHRVVNVKVEPGPRTTIDTVALDFTGAITQDAKRIDELKKSWSLQHGMAF
RQSGWDKAKDDGLAALQSKRYYAARQTSSQARVDPDENKADLSVGYDSGPAYTLGPLEVQGLSRYPLSIINHVNPLRVGE
DYSADRLQSLQAAIQGQPYFSNAIVDLGDDPKNPVNAPVRVRVREYPPNRITGGVGYGTDTGASLEGRYQYLNLFSKAWV
LDTQARIEQRRQYLFAGVTVPPDDKQYVNSFYTSMDRTDTSGTDTRSYRSGFKQTRVRGIYETSFTVDFYYDDLRPDGAE
RQLSKALVPGFAWTRRDVDDPLFPRRGNIITTQIGAAVKGVLTDQSFVRSYSRIRQFVPVGQRDIFVARGELGAVITAGS
GDGVPATLRFRTGGTQSVRGYDFQSIGNDVNGSTLPTKFLVTGGLEYQRWFLPQWGAAVFWDTGTATDNWSERRWFNGVG
VGVRWKSPVGPIQLDMAYGIQQKQFRPSVSLGIAF

Sequences:

>Translated_595_residues
MTGSNRPSRPSRPPRFRFLGLPAAALAAGFVLSLACAAAHAEYDVKIDAPKSIRDLLERHLDLSRYKDRKDITDDQLQYM
VETIGDQVTKLTATEGYFVPKATAKLDGPPDHRVVNVKVEPGPRTTIDTVALDFTGAITQDAKRIDELKKSWSLQHGMAF
RQSGWDKAKDDGLAALQSKRYYAARQTSSQARVDPDENKADLSVGYDSGPAYTLGPLEVQGLSRYPLSIINHVNPLRVGE
DYSADRLQSLQAAIQGQPYFSNAIVDLGDDPKNPVNAPVRVRVREYPPNRITGGVGYGTDTGASLEGRYQYLNLFSKAWV
LDTQARIEQRRQYLFAGVTVPPDDKQYVNSFYTSMDRTDTSGTDTRSYRSGFKQTRVRGIYETSFTVDFYYDDLRPDGAE
RQLSKALVPGFAWTRRDVDDPLFPRRGNIITTQIGAAVKGVLTDQSFVRSYSRIRQFVPVGQRDIFVARGELGAVITAGS
GDGVPATLRFRTGGTQSVRGYDFQSIGNDVNGSTLPTKFLVTGGLEYQRWFLPQWGAAVFWDTGTATDNWSERRWFNGVG
VGVRWKSPVGPIQLDMAYGIQQKQFRPSVSLGIAF
>Mature_594_residues
TGSNRPSRPSRPPRFRFLGLPAAALAAGFVLSLACAAAHAEYDVKIDAPKSIRDLLERHLDLSRYKDRKDITDDQLQYMV
ETIGDQVTKLTATEGYFVPKATAKLDGPPDHRVVNVKVEPGPRTTIDTVALDFTGAITQDAKRIDELKKSWSLQHGMAFR
QSGWDKAKDDGLAALQSKRYYAARQTSSQARVDPDENKADLSVGYDSGPAYTLGPLEVQGLSRYPLSIINHVNPLRVGED
YSADRLQSLQAAIQGQPYFSNAIVDLGDDPKNPVNAPVRVRVREYPPNRITGGVGYGTDTGASLEGRYQYLNLFSKAWVL
DTQARIEQRRQYLFAGVTVPPDDKQYVNSFYTSMDRTDTSGTDTRSYRSGFKQTRVRGIYETSFTVDFYYDDLRPDGAER
QLSKALVPGFAWTRRDVDDPLFPRRGNIITTQIGAAVKGVLTDQSFVRSYSRIRQFVPVGQRDIFVARGELGAVITAGSG
DGVPATLRFRTGGTQSVRGYDFQSIGNDVNGSTLPTKFLVTGGLEYQRWFLPQWGAAVFWDTGTATDNWSERRWFNGVGV
GVRWKSPVGPIQLDMAYGIQQKQFRPSVSLGIAF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ytfM [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=569, Percent_Identity=25.3075571177504, Blast_Score=126, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184 [H]

Pfam domain/function: PF01103 Bac_surface_Ag [H]

EC number: NA

Molecular weight: Translated: 66084; Mature: 65953

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSNRPSRPSRPPRFRFLGLPAAALAAGFVLSLACAAAHAEYDVKIDAPKSIRDLLERH
CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
LDLSRYKDRKDITDDQLQYMVETIGDQVTKLTATEGYFVPKATAKLDGPPDHRVVNVKVE
HCHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCCCCEEEEEEEC
PGPRTTIDTVALDFTGAITQDAKRIDELKKSWSLQHGMAFRQSGWDKAKDDGLAALQSKR
CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCHHHHCCCCCCCCCCHHHHHHHH
YYAARQTSSQARVDPDENKADLSVGYDSGPAYTLGPLEVQGLSRYPLSIINHVNPLRVGE
HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEECCEEECCCCCCCHHHHCCCCCEECCC
DYSADRLQSLQAAIQGQPYFSNAIVDLGDDPKNPVNAPVRVRVREYPPNRITGGVGYGTD
CCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
TGASLEGRYQYLNLFSKAWVLDTQARIEQRRQYLFAGVTVPPDDKQYVNSFYTSMDRTDT
CCCCCCCHHHHHHHHHHHHEECHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCC
SGTDTRSYRSGFKQTRVRGIYETSFTVDFYYDDLRPDGAERQLSKALVPGFAWTRRDVDD
CCCCCHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
PLFPRRGNIITTQIGAAVKGVLTDQSFVRSYSRIRQFVPVGQRDIFVARGELGAVITAGS
CCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCC
GDGVPATLRFRTGGTQSVRGYDFQSIGNDVNGSTLPTKFLVTGGLEYQRWFLPQWGAAVF
CCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCHHEEECCCCCCEEE
WDTGTATDNWSERRWFNGVGVGVRWKSPVGPIQLDMAYGIQQKQFRPSVSLGIAF
EECCCCCCCCHHHHHCCCCEEEEEECCCCCCEEEEHHHCCCHHHCCCCCEEEECC
>Mature Secondary Structure 
TGSNRPSRPSRPPRFRFLGLPAAALAAGFVLSLACAAAHAEYDVKIDAPKSIRDLLERH
CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
LDLSRYKDRKDITDDQLQYMVETIGDQVTKLTATEGYFVPKATAKLDGPPDHRVVNVKVE
HCHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCCCCEEEEEEEC
PGPRTTIDTVALDFTGAITQDAKRIDELKKSWSLQHGMAFRQSGWDKAKDDGLAALQSKR
CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCHHHHCCCCCCCCCCHHHHHHHH
YYAARQTSSQARVDPDENKADLSVGYDSGPAYTLGPLEVQGLSRYPLSIINHVNPLRVGE
HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEECCEEECCCCCCCHHHHCCCCCEECCC
DYSADRLQSLQAAIQGQPYFSNAIVDLGDDPKNPVNAPVRVRVREYPPNRITGGVGYGTD
CCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
TGASLEGRYQYLNLFSKAWVLDTQARIEQRRQYLFAGVTVPPDDKQYVNSFYTSMDRTDT
CCCCCCCHHHHHHHHHHHHEECHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCCC
SGTDTRSYRSGFKQTRVRGIYETSFTVDFYYDDLRPDGAERQLSKALVPGFAWTRRDVDD
CCCCCHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
PLFPRRGNIITTQIGAAVKGVLTDQSFVRSYSRIRQFVPVGQRDIFVARGELGAVITAGS
CCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCC
GDGVPATLRFRTGGTQSVRGYDFQSIGNDVNGSTLPTKFLVTGGLEYQRWFLPQWGAAVF
CCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCHHEEECCCCCCEEE
WDTGTATDNWSERRWFNGVGVGVRWKSPVGPIQLDMAYGIQQKQFRPSVSLGIAF
EECCCCCCCCHHHHHCCCCEEEEEECCCCCCEEEEHHHCCCHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]