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The map label for this gene is hycF [C]

Identifier: 187929661

GI number: 187929661

Start: 2698805

End: 2700964

Strand: Reverse

Name: hycF [C]

Synonym: Rpic_2589

Alternate gene names: 187929661

Gene position: 2700964-2698805 (Counterclockwise)

Preceding gene: 187929662

Following gene: 187929660

Centisome position: 68.51

GC content: 67.78

Gene sequence:

>2160_bases
ATGCCGACACTGCTCTGCAGTTGCAATCACACCATGCCGATCGATGCCGATGCGGTGGGCGACGCCCTGCGCGCGTCTGA
CGCCGCTATCGACGCCCCCAGCAAGACGCACCACCTGCTGTGCCGCCGCGAGATCAGCGCGTTCACACAGGCGCTGGATG
GTACGGAAGACGTCGTTGTTGCCTGCACGCAGGAAAAGGCGCTGTTTGCAGAAGTGGCCGCGCAGCATGAGGGTGTGACC
GCACCGATCCATTTCGTCAACGTGCGCGAAACGGGCGGGTGGTCGGCAGGCGCTAAACGCGATGCGCGCGGTTTCCGTGC
CAAGACAGCGGCGCTGCTGGCCGTCGCTGGCTTGCCGGCGCCGGAGCCAGTGCCGGTGGTCGACTACCGCTCCGACGGCA
ACGTGCTGATCATCGGTCCTGCCGAGCGTGCCATGCCGTGGGCGGAACGGCTGGCCGACCAACTGAGCGTGGCGGTGCTC
GTCACCGGGCGCGATCGCGCAAGTGGTCCGTTTGTCCCGCCGATGGAGCGCCGCTGGCCGGTCCACGCGGGCGAGCTGGC
GCAGGTGAACGGCTGGCTTGGTGCGTTCGAGGTGCAATGGCGCAACCGCAACCCGATTGACCTGGACCGCTGCACGCGCT
GCAACGCCTGCATCGATGTCTGCCCGGAAGGCGCCATCGACGCGCTGTACCAGATCGATCTGGATGCATGCCGCGACCAT
CGCGCGTGCGTCAAGGCGTGCGGCGATGCATTGGCCATCGATTTCAGCCGCGTGGACGCACCGCAGGCGCTATCGGGCCA
ATTCGACCTGATCTTCGATCTGAACGATGCGCCGGCGTTTGCCCAGCACCAGCCGCCGCAGGGCTACTTCCATGCGGGCG
CAGACGCGGGCCGCCAACTGACGGCATCGCTGGCGTTGCTGCAAATGGTGGGGGAGTTTGAGAAGCCCAAGTTCTTCCAG
TACAAGGAATCGATCTGCGCGCACGGGCGTAACGGCCAAGTGGGCTGCAACGCTTGCGTGGACGTGTGTTCGGCGTCGGC
GATTGCGTCGCAGTGGAAGGACGGCCGCGGCAGCGTGCACGTCACGCCCAATCTCTGTGTGGGCTGCGGTGCGTGTACGA
CCGCGTGTCCCACCGGCGCCATCACCTATGCCTATCCGAGCGCGCCGTACCAGGGGCGCAAGCTGAAGACGCTGCTCGGC
ACGTATGCATCGGCGGGTGGGCGTGATGCCGTGGTTCTGCTGCATAACGGTGGGCGGGGCCGCACGCTGATCGAGCAACT
GGGCCGTGCCGCGCGTATCGGCAAGGCCCAGGGCGTGCCGGTGAATGTGCTGCCCGTCGAGGTCTTCCATGCGGCATCGA
CGGGATTGGACCTGTGGCTCTCCGCATTGGCTTACGGCGCCGCGCGCATCGCCATCCTGCTGACGGAAGACGACGCGCCG
CAGTACCGCGCGATGCTCGCCGAGCAGGTTGCCGTGGCGCAGGCGGTTCTGCAGGGGCTGGGTGAACCGGCAGACGGGGC
GGGTGTGGTGCTGATCGACGTGGCGGATGCGGCGGCGCTTGATGCACGCTTGAGCCACGCCGACGTGTCGGGCCCGGTGC
GCGGCTTTCGCCGTGATATGCCGGCGGCCACCTTTGCGGTGGCCGCTGCCAAGCGCGAGGCACTCGATTTCGCGCTCGAC
CATCTTGCACGCCACGCCAAGGCCACCGAGGCCATCATCCCGCTGCCAGCCGGTGCGCCGTTTGGCGCCATCACCGTGAA
CCGCGAACGCTGCACGCTGTGCATGGCGTGCGTGGGCGCGTGCCCGTCGCAGGCGCTGCGCGATCAGGCCGAGCGGCCCG
TGCTGGCCATGATCGAGCGCAACTGCGTCCAATGCGGCCTGTGCGAGACCACGTGCCCTGAAAGCGCCATCGCCCTCGTG
CCGCGTTTGAACCTGTCGGCAGAAGCCCGCCAATCGGCCACGCTCAACGAGGCGCAGCCGTTCCACTGCATCCGCTGCAA
CAAGCCGTTCGGCACCGCGCAGATGGTCGCGACGATGCTGGCCAAGCTGGGCGCGCATCCGGCGTTCTCCGGCGCCGCCG
CCGAGCGCCTCAAGATGTGCAGCGATTGCCGCGTGATCGACATGATGCAGCACGGCGAACGCCCGGGCGCCCCGCACTGA

Upstream 100 bases:

>100_bases
AGCCGCCGTCCGTAGAATAAAAAGAAGGCCGCGCGGCAAAGACCGTGCTGCCATGTCTCCACAGCCTGCGCCATGCACGT
GGGCGCTCACGCACAAATCC

Downstream 100 bases:

>100_bases
AGACTGCGCATTGAAGACCGCACACTGAAGCCGATTCCCGATCCCATGACCGACGCCCAGCCCCTGCAATTCCAGCCCGC
CGCCACGCCCGCCGACAGCG

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: Methyl-Viologen-Reducing Hydrogenase Delta Subunit; 4Fe-4S Ferredoxin; 4fe-4S Ferredoxin; Polyferredoxins; Ferridoxin Protein

Number of amino acids: Translated: 719; Mature: 718

Protein sequence:

>719_residues
MPTLLCSCNHTMPIDADAVGDALRASDAAIDAPSKTHHLLCRREISAFTQALDGTEDVVVACTQEKALFAEVAAQHEGVT
APIHFVNVRETGGWSAGAKRDARGFRAKTAALLAVAGLPAPEPVPVVDYRSDGNVLIIGPAERAMPWAERLADQLSVAVL
VTGRDRASGPFVPPMERRWPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAIDALYQIDLDACRDH
RACVKACGDALAIDFSRVDAPQALSGQFDLIFDLNDAPAFAQHQPPQGYFHAGADAGRQLTASLALLQMVGEFEKPKFFQ
YKESICAHGRNGQVGCNACVDVCSASAIASQWKDGRGSVHVTPNLCVGCGACTTACPTGAITYAYPSAPYQGRKLKTLLG
TYASAGGRDAVVLLHNGGRGRTLIEQLGRAARIGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
QYRAMLAEQVAVAQAVLQGLGEPADGAGVVLIDVADAAALDARLSHADVSGPVRGFRRDMPAATFAVAAAKREALDFALD
HLARHAKATEAIIPLPAGAPFGAITVNRERCTLCMACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAIALV
PRLNLSAEARQSATLNEAQPFHCIRCNKPFGTAQMVATMLAKLGAHPAFSGAAAERLKMCSDCRVIDMMQHGERPGAPH

Sequences:

>Translated_719_residues
MPTLLCSCNHTMPIDADAVGDALRASDAAIDAPSKTHHLLCRREISAFTQALDGTEDVVVACTQEKALFAEVAAQHEGVT
APIHFVNVRETGGWSAGAKRDARGFRAKTAALLAVAGLPAPEPVPVVDYRSDGNVLIIGPAERAMPWAERLADQLSVAVL
VTGRDRASGPFVPPMERRWPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAIDALYQIDLDACRDH
RACVKACGDALAIDFSRVDAPQALSGQFDLIFDLNDAPAFAQHQPPQGYFHAGADAGRQLTASLALLQMVGEFEKPKFFQ
YKESICAHGRNGQVGCNACVDVCSASAIASQWKDGRGSVHVTPNLCVGCGACTTACPTGAITYAYPSAPYQGRKLKTLLG
TYASAGGRDAVVLLHNGGRGRTLIEQLGRAARIGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
QYRAMLAEQVAVAQAVLQGLGEPADGAGVVLIDVADAAALDARLSHADVSGPVRGFRRDMPAATFAVAAAKREALDFALD
HLARHAKATEAIIPLPAGAPFGAITVNRERCTLCMACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAIALV
PRLNLSAEARQSATLNEAQPFHCIRCNKPFGTAQMVATMLAKLGAHPAFSGAAAERLKMCSDCRVIDMMQHGERPGAPH
>Mature_718_residues
PTLLCSCNHTMPIDADAVGDALRASDAAIDAPSKTHHLLCRREISAFTQALDGTEDVVVACTQEKALFAEVAAQHEGVTA
PIHFVNVRETGGWSAGAKRDARGFRAKTAALLAVAGLPAPEPVPVVDYRSDGNVLIIGPAERAMPWAERLADQLSVAVLV
TGRDRASGPFVPPMERRWPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAIDALYQIDLDACRDHR
ACVKACGDALAIDFSRVDAPQALSGQFDLIFDLNDAPAFAQHQPPQGYFHAGADAGRQLTASLALLQMVGEFEKPKFFQY
KESICAHGRNGQVGCNACVDVCSASAIASQWKDGRGSVHVTPNLCVGCGACTTACPTGAITYAYPSAPYQGRKLKTLLGT
YASAGGRDAVVLLHNGGRGRTLIEQLGRAARIGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAPQ
YRAMLAEQVAVAQAVLQGLGEPADGAGVVLIDVADAAALDARLSHADVSGPVRGFRRDMPAATFAVAAAKREALDFALDH
LARHAKATEAIIPLPAGAPFGAITVNRERCTLCMACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAIALVP
RLNLSAEARQSATLNEAQPFHCIRCNKPFGTAQMVATMLAKLGAHPAFSGAAAERLKMCSDCRVIDMMQHGERPGAPH

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76089; Mature: 75957

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLLCSCNHTMPIDADAVGDALRASDAAIDAPSKTHHLLCRREISAFTQALDGTEDVVV
CCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
ACTQEKALFAEVAAQHEGVTAPIHFVNVRETGGWSAGAKRDARGFRAKTAALLAVAGLPA
EECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHEECCCC
PEPVPVVDYRSDGNVLIIGPAERAMPWAERLADQLSVAVLVTGRDRASGPFVPPMERRWP
CCCCEEEEECCCCCEEEECCCHHCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCC
VHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAIDALYQIDLDACRDH
CCCCCHHHHCCCEEEEEEEECCCCCCCHHHHCCCCHHHHHCCCHHHHHHHEECHHHHCCH
RACVKACGDALAIDFSRVDAPQALSGQFDLIFDLNDAPAFAQHQPPQGYFHAGADAGRQL
HHHHHHCCCCEEEEHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCHHH
TASLALLQMVGEFEKPKFFQYKESICAHGRNGQVGCNACVDVCSASAIASQWKDGRGSVH
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
VTPNLCVGCGACTTACPTGAITYAYPSAPYQGRKLKTLLGTYASAGGRDAVVLLHNGGRG
ECCCCEEECCCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCC
RTLIEQLGRAARIGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
HHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHCCEEEEEEEECCCCH
QYRAMLAEQVAVAQAVLQGLGEPADGAGVVLIDVADAAALDARLSHADVSGPVRGFRRDM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCHHHHHHHCC
PAATFAVAAAKREALDFALDHLARHAKATEAIIPLPAGAPFGAITVNRERCTLCMACVGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECHHHHHHHHHHHCC
CPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAIALVPRLNLSAEARQSATLNEAQP
CHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCC
FHCIRCNKPFGTAQMVATMLAKLGAHPAFSGAAAERLKMCSDCRVIDMMQHGERPGAPH
EEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PTLLCSCNHTMPIDADAVGDALRASDAAIDAPSKTHHLLCRREISAFTQALDGTEDVVV
CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
ACTQEKALFAEVAAQHEGVTAPIHFVNVRETGGWSAGAKRDARGFRAKTAALLAVAGLPA
EECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHEECCCC
PEPVPVVDYRSDGNVLIIGPAERAMPWAERLADQLSVAVLVTGRDRASGPFVPPMERRWP
CCCCEEEEECCCCCEEEECCCHHCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCC
VHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAIDALYQIDLDACRDH
CCCCCHHHHCCCEEEEEEEECCCCCCCHHHHCCCCHHHHHCCCHHHHHHHEECHHHHCCH
RACVKACGDALAIDFSRVDAPQALSGQFDLIFDLNDAPAFAQHQPPQGYFHAGADAGRQL
HHHHHHCCCCEEEEHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCHHH
TASLALLQMVGEFEKPKFFQYKESICAHGRNGQVGCNACVDVCSASAIASQWKDGRGSVH
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
VTPNLCVGCGACTTACPTGAITYAYPSAPYQGRKLKTLLGTYASAGGRDAVVLLHNGGRG
ECCCCEEECCCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCC
RTLIEQLGRAARIGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
HHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHCCEEEEEEEECCCCH
QYRAMLAEQVAVAQAVLQGLGEPADGAGVVLIDVADAAALDARLSHADVSGPVRGFRRDM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCHHHHHHHCC
PAATFAVAAAKREALDFALDHLARHAKATEAIIPLPAGAPFGAITVNRERCTLCMACVGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECHHHHHHHHHHHCC
CPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAIALVPRLNLSAEARQSATLNEAQP
CHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCC
FHCIRCNKPFGTAQMVATMLAKLGAHPAFSGAAAERLKMCSDCRVIDMMQHGERPGAPH
EEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA