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The map label for this gene is cyt [H]

Identifier: 187929609

GI number: 187929609

Start: 2648200

End: 2648595

Strand: Reverse

Name: cyt [H]

Synonym: Rpic_2536

Alternate gene names: 187929609

Gene position: 2648595-2648200 (Counterclockwise)

Preceding gene: 187929611

Following gene: 187929608

Centisome position: 67.18

GC content: 61.62

Gene sequence:

>396_bases
ATGATGGAGACGACACCCTTGAATATCCCGCCCAAGTCAAGTGAGGACGCGCACATGCAGACCCTGCGCGTCCTGTTCCG
CAGCGCATTGATTGGCGCTGCTCTATTGGCGGCGAGCGCGTCGCATGCTGCACTGGATGTTGGCCGGGCCAAGGCGCTGC
TCTCGCAGAATGCATGCCTTGGTTGCCACGCGGTCGAATCACGCGTGGTCGGGCCCGCCTACAAAGACGTGGCGGCCAAA
TACAAAGGCGGGAATCCCGTTGTCCTCGGTGCGCGCATCAAGTCAGGCGGGGCAGGAAAATGGGGTGAGATTGCCATGCC
GCCTCAGGCCCAGTTGTCCGATGCGGATGCCAGGATTCTGGCTGCGTGGATTTTGGCCGACTGCCCCGATCAATGA

Upstream 100 bases:

>100_bases
CTTCACAAGGGTTTCCCCTGTGAATAACGGGATGTGACCCGTGCTCTCATGCTTGCTCCTATAGTCCCATCAACTCCTTC
ATCAGAGAGGAGCCAGATCC

Downstream 100 bases:

>100_bases
GTTTAGCGAGCTGTCTTGCTGTTCGTGGTGACATTGTGAAAACGCGCGTCAGTCCGCCGCATGGCGACAAGCGCTGAACA
TTCTGGAGGTTACGCCTGTG

Product: cytochrome c class I

Products: NA

Alternate protein names: Cytochrome c-551; Cytochrome c552 [H]

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MMETTPLNIPPKSSEDAHMQTLRVLFRSALIGAALLAASASHAALDVGRAKALLSQNACLGCHAVESRVVGPAYKDVAAK
YKGGNPVVLGARIKSGGAGKWGEIAMPPQAQLSDADARILAAWILADCPDQ

Sequences:

>Translated_131_residues
MMETTPLNIPPKSSEDAHMQTLRVLFRSALIGAALLAASASHAALDVGRAKALLSQNACLGCHAVESRVVGPAYKDVAAK
YKGGNPVVLGARIKSGGAGKWGEIAMPPQAQLSDADARILAAWILADCPDQ
>Mature_131_residues
MMETTPLNIPPKSSEDAHMQTLRVLFRSALIGAALLAASASHAALDVGRAKALLSQNACLGCHAVESRVVGPAYKDVAAK
YKGGNPVVLGARIKSGGAGKWGEIAMPPQAQLSDADARILAAWILADCPDQ

Specific function: Monoheme c-type cytochrome. Probable electron donor to membrane cytochrome oxidase and to periplasmic nitrite reductase [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13574; Mature: 13574

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00165 DEHYDRATASE_SER_THR ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMETTPLNIPPKSSEDAHMQTLRVLFRSALIGAALLAASASHAALDVGRAKALLSQNACL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
GCHAVESRVVGPAYKDVAAKYKGGNPVVLGARIKSGGAGKWGEIAMPPQAQLSDADARIL
CHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
AAWILADCPDQ
HHHHHHCCCCC
>Mature Secondary Structure
MMETTPLNIPPKSSEDAHMQTLRVLFRSALIGAALLAASASHAALDVGRAKALLSQNACL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
GCHAVESRVVGPAYKDVAAKYKGGNPVVLGARIKSGGAGKWGEIAMPPQAQLSDADARIL
CHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
AAWILADCPDQ
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9746537; 12700255 [H]