| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187929607
Identifier: 187929607
GI number: 187929607
Start: 2645805
End: 2647373
Strand: Reverse
Name: 187929607
Synonym: Rpic_2534
Alternate gene names: NA
Gene position: 2647373-2645805 (Counterclockwise)
Preceding gene: 187929608
Following gene: 187929606
Centisome position: 67.15
GC content: 59.46
Gene sequence:
>1569_bases ATGGCAACGTTTGATTTCAGCGATGACTCGGTCGTCGTGATCATCGGTTCTGGTGCCGGCGGCGGCACGCTGGCCAACGA GCTGTGCCAGAAAGGCATCAAGGTCGTCGTGCTGGAAGCGGGCGGCAAGCAGTCGAATGCCAGCTTCATCAATGATGAAT GGAAGGCCTTCAGCCAACTGGCTTGGCTCGACAAGCGCACGACCTCCGGAAGCTGGCGCATTGCCAAGGATTTTGCGGAA CTCCCTGCCTGGATCTGCAAGACGGTTGGAGGTACAAGCACGCACTGGGCCGGCGCTTCTCTGCGCTTCCAGGAGCATGA ATTTCAAGCCCGGACGCTCTACGGCGACCTCAAGGGAGCGAATCTGCTGGATTGGCCTCTCACGCTCAAGGAGCTGGAGC CGTATTACGCCAAGGCCGAAGACAAGATGGGCGTCACGCGCACCAATGGCATCCCGGGCCTGCCGGGCAACAACAACTTC AAGGTGATGTACAACGGCGCCACCCGGCTCGGCTATAAGGAAGTGCACACCGGCAACATGGCCATCAACAGCAAGCCGCG CAAGGGTCGCGCACGCTGCATGCAGCTCGGCTTCTGCTTCGAGGGCTGCAAGAGCGGCGCCAAATGGTCGACGCTGTACA CCGAGTTGCCCGAGGCAGACGCTACCGGCAATTTCGAGTTGCGCACGCAGGCGCATGTCACCCGCATCGAACACGATGAC AAGGGGCGCGTGAATGCCGTCATCTATATGGACAAGGACGGCAAGGAACAGCGGCAAAAGGCGCGCATCGTCTGCGTGGC GGGGAACTCCATCGAAACACCGCGTCTGCTGCTGCTATCCGCTTCGAACATGTTCAAGGACGGTCTGGCCAATTCGTCGG GTCAGGTCGGCCGCAATTACATGCGCCATATGACCGGGTCGGTTTATGCGGCATTCAAGGAGCCTGTGCACATGTACCGC GGCACGACCATGGCCGGCATTGTGCGTGACGAGGCTCGCCACGATACCCGTCGTGGGTTCGTCGGCGGTTACGAACTCGA AACGCTGTCGCTGGGTATTCCGTTCATGGCAGCCTTTCTGAATCCGGGAGGATGGGGTTCCGACTTCGCGTGGTGGATGG ATCACTATACGAATTTGGCGGGTATGTGGCTCGTCGGTGAAGACATGCCGCGTGAGACGAACCGCGTTACGCTCAATACG AACGTCAAGGATCAATGGGGCAACTACGTGCCGAATGTGCACTTCGATGATCACGAAAACGACATCGCCATGCGCAAACA CGCCTACACCCAGGCCGAGCGCATCTACGGTGCAGTCGGTGCGATCAAGACGTTCCGCACGCCGCCGTATCCGTCGACCC ATAATCTGGGTACCGCCCGCATGAGCGCCCGCCCGCAGGATGGCGTCTGCAATAAATGGGGGCAGACACATGACATCGCG AATCTGTTCATCAGCGACGGCAGCCAGTTCACCACGGGCGGCTCGGAAAACCCGACATTGACCATCGTTACGCTCGCTAT CCGGCAGGCTGACTACATTGCCAAGCAGATGTCGCAACGTTCGATCTGA
Upstream 100 bases:
>100_bases CGCTTCAGGCCCGTTAAGCGCTCGACGCAGAGCCGAGCCCGTTGACCGGAGCGAGACAAAAATGCCGGCGGCATGCTGGT GCGCAATACAGGAGACATGT
Downstream 100 bases:
>100_bases GTGCCGCAGCGTCGGTTGACCCTCTGCAGGAGACTGCGATGTGTGAATTCTTCGTCACCGCTGATCCCATTCTTTATGAG TCGCGTACGCGCTCCGTGCG
Product: gluconate 2-dehydrogenase
Products: NA
Alternate protein names: GA 2-DH dehydrogenase subunit; GADH dehydrogenase subunit [H]
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MATFDFSDDSVVVIIGSGAGGGTLANELCQKGIKVVVLEAGGKQSNASFINDEWKAFSQLAWLDKRTTSGSWRIAKDFAE LPAWICKTVGGTSTHWAGASLRFQEHEFQARTLYGDLKGANLLDWPLTLKELEPYYAKAEDKMGVTRTNGIPGLPGNNNF KVMYNGATRLGYKEVHTGNMAINSKPRKGRARCMQLGFCFEGCKSGAKWSTLYTELPEADATGNFELRTQAHVTRIEHDD KGRVNAVIYMDKDGKEQRQKARIVCVAGNSIETPRLLLLSASNMFKDGLANSSGQVGRNYMRHMTGSVYAAFKEPVHMYR GTTMAGIVRDEARHDTRRGFVGGYELETLSLGIPFMAAFLNPGGWGSDFAWWMDHYTNLAGMWLVGEDMPRETNRVTLNT NVKDQWGNYVPNVHFDDHENDIAMRKHAYTQAERIYGAVGAIKTFRTPPYPSTHNLGTARMSARPQDGVCNKWGQTHDIA NLFISDGSQFTTGGSENPTLTIVTLAIRQADYIAKQMSQRSI
Sequences:
>Translated_522_residues MATFDFSDDSVVVIIGSGAGGGTLANELCQKGIKVVVLEAGGKQSNASFINDEWKAFSQLAWLDKRTTSGSWRIAKDFAE LPAWICKTVGGTSTHWAGASLRFQEHEFQARTLYGDLKGANLLDWPLTLKELEPYYAKAEDKMGVTRTNGIPGLPGNNNF KVMYNGATRLGYKEVHTGNMAINSKPRKGRARCMQLGFCFEGCKSGAKWSTLYTELPEADATGNFELRTQAHVTRIEHDD KGRVNAVIYMDKDGKEQRQKARIVCVAGNSIETPRLLLLSASNMFKDGLANSSGQVGRNYMRHMTGSVYAAFKEPVHMYR GTTMAGIVRDEARHDTRRGFVGGYELETLSLGIPFMAAFLNPGGWGSDFAWWMDHYTNLAGMWLVGEDMPRETNRVTLNT NVKDQWGNYVPNVHFDDHENDIAMRKHAYTQAERIYGAVGAIKTFRTPPYPSTHNLGTARMSARPQDGVCNKWGQTHDIA NLFISDGSQFTTGGSENPTLTIVTLAIRQADYIAKQMSQRSI >Mature_521_residues ATFDFSDDSVVVIIGSGAGGGTLANELCQKGIKVVVLEAGGKQSNASFINDEWKAFSQLAWLDKRTTSGSWRIAKDFAEL PAWICKTVGGTSTHWAGASLRFQEHEFQARTLYGDLKGANLLDWPLTLKELEPYYAKAEDKMGVTRTNGIPGLPGNNNFK VMYNGATRLGYKEVHTGNMAINSKPRKGRARCMQLGFCFEGCKSGAKWSTLYTELPEADATGNFELRTQAHVTRIEHDDK GRVNAVIYMDKDGKEQRQKARIVCVAGNSIETPRLLLLSASNMFKDGLANSSGQVGRNYMRHMTGSVYAAFKEPVHMYRG TTMAGIVRDEARHDTRRGFVGGYELETLSLGIPFMAAFLNPGGWGSDFAWWMDHYTNLAGMWLVGEDMPRETNRVTLNTN VKDQWGNYVPNVHFDDHENDIAMRKHAYTQAERIYGAVGAIKTFRTPPYPSTHNLGTARMSARPQDGVCNKWGQTHDIAN LFISDGSQFTTGGSENPTLTIVTLAIRQADYIAKQMSQRSI
Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate. This subunit functions as the dehydrogenase [H]
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GMC oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000172 - InterPro: IPR007867 [H]
Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]
EC number: =1.1.99.3 [H]
Molecular weight: Translated: 57879; Mature: 57748
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATFDFSDDSVVVIIGSGAGGGTLANELCQKGIKVVVLEAGGKQSNASFINDEWKAFSQL CCEECCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHH AWLDKRTTSGSWRIAKDFAELPAWICKTVGGTSTHWAGASLRFQEHEFQARTLYGDLKGA HHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCEEEEEEECCCCC NLLDWPLTLKELEPYYAKAEDKMGVTRTNGIPGLPGNNNFKVMYNGATRLGYKEVHTGNM CEEECCCCHHHCCCHHHCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEECCCE AINSKPRKGRARCMQLGFCFEGCKSGAKWSTLYTELPEADATGNFELRTQAHVTRIEHDD EECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCEEEEEEEEEEEECCCC KGRVNAVIYMDKDGKEQRQKARIVCVAGNSIETPRLLLLSASNMFKDGLANSSGQVGRNY CCCEEEEEEECCCCHHHHCCEEEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCHHHHHH MRHMTGSVYAAFKEPVHMYRGTTMAGIVRDEARHDTRRGFVGGYELETLSLGIPFMAAFL HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHC NPGGWGSDFAWWMDHYTNLAGMWLVGEDMPRETNRVTLNTNVKDQWGNYVPNVHFDDHEN CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCC DIAMRKHAYTQAERIYGAVGAIKTFRTPPYPSTHNLGTARMSARPQDGVCNKWGQTHDIA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC NLFISDGSQFTTGGSENPTLTIVTLAIRQADYIAKQMSQRSI EEEEECCCEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHCCC >Mature Secondary Structure ATFDFSDDSVVVIIGSGAGGGTLANELCQKGIKVVVLEAGGKQSNASFINDEWKAFSQL CEECCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHH AWLDKRTTSGSWRIAKDFAELPAWICKTVGGTSTHWAGASLRFQEHEFQARTLYGDLKGA HHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHCEEEEEEECCCCC NLLDWPLTLKELEPYYAKAEDKMGVTRTNGIPGLPGNNNFKVMYNGATRLGYKEVHTGNM CEEECCCCHHHCCCHHHCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEECCCE AINSKPRKGRARCMQLGFCFEGCKSGAKWSTLYTELPEADATGNFELRTQAHVTRIEHDD EECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCEEEEEEEEEEEECCCC KGRVNAVIYMDKDGKEQRQKARIVCVAGNSIETPRLLLLSASNMFKDGLANSSGQVGRNY CCCEEEEEEECCCCHHHHCCEEEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCHHHHHH MRHMTGSVYAAFKEPVHMYRGTTMAGIVRDEARHDTRRGFVGGYELETLSLGIPFMAAFL HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHC NPGGWGSDFAWWMDHYTNLAGMWLVGEDMPRETNRVTLNTNVKDQWGNYVPNVHFDDHEN CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCC DIAMRKHAYTQAERIYGAVGAIKTFRTPPYPSTHNLGTARMSARPQDGVCNKWGQTHDIA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC NLFISDGSQFTTGGSENPTLTIVTLAIRQADYIAKQMSQRSI EEEEECCCEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9352901 [H]