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The map label for this gene is yncD [C]

Identifier: 187929574

GI number: 187929574

Start: 2610448

End: 2613069

Strand: Reverse

Name: yncD [C]

Synonym: Rpic_2497

Alternate gene names: 187929574

Gene position: 2613069-2610448 (Counterclockwise)

Preceding gene: 187929575

Following gene: 187929573

Centisome position: 66.28

GC content: 61.78

Gene sequence:

>2622_bases
GTGCATTCGCCTATCAGCCGTTCGGAGAAGAGCACCAGCCGTGTGCGCAACGCCGCACCGTGCCTTGCAGGCGGCGTGGC
TGCGCTCACTGCCGCGGGGCTTTACTCGCCCGCGTTTGCCGAAGACCAGATCGTGGCGGTGGCATTGCCGACCGCGCAGG
TCGTCGGCTCGACCCCGATCGACAGCATTGGCGTGCCGCTGTCGCAGTTTCCTGCCAATGCGCAGCGCGTGAGCGCGAAG
GATGCGCGCGAGCAACGCAACTCCAACCTGGCGGACCTGCTCAACGACAACCTGGGTCAGGTGAGCATCGGCAACGGGTC
GGGCAATCCGTACCAGAACGACATCAACTACCGCGGGTTTCAGGTGTCGTCGCTGCTGGGCGTGCCCATCGGCGTGTCGG
TCTACTTTGACGGCGTGCGGATGAACGAGCCCTTCGGCTCCATCGTGAACTGGGATCTGATTCCCATGAACGCGATGTCC
AGCGTCAACATCCTGCCGGGCTCCAACCCGATGTTCGGCCTCAACACACTGGGTGGCGCGCTTGTCGTCAACACCAAGAA
CGGGAAGGACAACGCCGGCACGTCGATTGAGGCGCTGGGCGGGTCGTTTGGCCGCCGTGCGCTGAGCTTTGAGACCGGTA
TCGTCGACAAGGCTCACGGCACCGATTACTTCGTCGCCGGCAACTTCGACCGGCAGGACGGCTTTCGCGACCACTCGGGT
TCGAACGTCAAGCAACTGTATGGAAAAGCGCGGTGGCACGGCAACGACGGCGCTACCCAGCTCGAGCTGTCGGCCGCACT
GGCAGATACGTCGCTGAGCGGCACGCAGTCGTTGCCGATGGACATGATGGCGAACCGCAGCGCCGCCTATACGTGGCCCG
ACACCATCTCAAACCGGATGGCGCTGCTGAACCTGACGGGCAGCCATTGGTTGAACGACACGAACCAACTGGCCGGCAGC
ATCTACTACCGCAAGGCCAGCCTTCACAACGTCAACAGCAACGCACAGCTGGATGACGGCTGCTTCAACGACGACGGCTC
GCTGGCAACGACCGCTGCAGGTGGCACCACCACGTACAAATGCGCGAACAAGGCGCCCAACGGCACGGCAGTCAATGCAG
TGACCGGCGCGAATGCGCTTGCGCTCGGCTACGGCCGCTGGACCAACGCCATCAATACCAGCGTCGTCGATTCCGCCACG
CATGAGGACACGGTGGGCACGTCCCTGCAGTGGTCGAACTTCAGCCAACTTGCGGGACACGACAATACGTTCACCTTCGG
TAGTGCGTTCGATCATTCGCGCATCACGTATGACCAGACGACCTACCTGGCACGGTTGATCAACTATCAGACAGTGGTGA
GCCCGAACCAGACATACGGATTCACCGCCAATGGATCGGCACCGTCGACATCGAACCCCGCGTTGTTCACGGGCAGCAAC
GTCATTGGCGCGGTCAACCTGTCGTCCAACATCAACAACTTCAGCCTGTACTTCACCGATACGTTGAGCGTGACGGAGAA
GCTGAGCGTGACTGCCTCTGGAAGCTTCAACTACACAACGCTCAACCAGGGCGGCGCCAACAATAAATACCTGAACGAAG
ACGGCGGTTACTCCTGGACGGACCAAGTATCGGGCGTGTCGTACTACAACCCCGGCTACGCGAATGCCTATCGGTACTCG
AATGCGGGATCGGGCGCGGCAACCGCTCCGAACGGTGTCCCGCCGGGGGCGGTGGCCGGACCGGAAACCAACAGCCTGGC
CGGCTCGCATCGCTATCGCCGTTTCAACCCGGCGCTCGGGTTCAACTACGACCTGGGCGCGGGGCAGGGCATCTTCGGCA
GCTACAGCGAATCGATGCGCGCTCCGACATCGATTGAATTGTCTTGCGCCGATCCGAACAGCCCGTGCTCGCTCCCCACG
GGGTTCAACGGCGATCCGGACCTGAAAGCCGTGGTAGCCAAAACCATCGAATTCGGCGGCCGCGGAAAGCTGGGCAAGTC
CACCTACTGGAGCGCGGCTGTCTACGACTCGCGCCTGAGCAATGACATCCAGTTCATCGCCACGTCAAACACGTACGGCT
ACTTCGCCAATGTCGGCAAGACCGAACGGCGCGGAATGGAACTGGGCGCCAGCACGAAGATCGACAAGTGGTCGTTGTCG
GCCAACTTTGGTTATGTCGATGCGATCTACAAGTCGGCATTCACCACGGCGAGCGGGCAGCACGTGGTCAGCGGCAACAA
GATCCCGGGCATCCCCGCGAAGACGCTCAAGCTCGGCGCGTCGTACGCCTTTAGCCCGAACCTGTCGATGGGCGGGAACG
TGATCCTGGTCAGCAAGCAGATCGCACACGGCAACGAAAGCAATGCCGACCCGAACGGCGAGGTGGCCGGCTACGGCCTC
GTCAATCTGAACCTGCACTACAAGCCGACGAAACATCTCGAGATTTCGGCGTACATCAGCAACCTGTTCAACAAGCGCTA
TTCCACGTACGGCCTGTCGGGCATGCGGAGCATCTACACGTTGGCGAAGCAGCAGTTCATGACGCCGGCACCGCCGCGCG
CGATCTGGATTGGCCTGACGTATTCGTTTGGAGGCAAGGCCGCCGGTGCCGATGCGGACTGA

Upstream 100 bases:

>100_bases
CCGCTGATTCCCTGCCGGGATTAGCCACCGCCACGCCTGTTCTCTGGGATACGTCATTGATACCCGAGACCCGCGAGCGA
GAACTTCGGGGAGACACTTC

Downstream 100 bases:

>100_bases
GCCGCCCATAAGAGACCATCATGAAAGCACTGACCCACTACTTCCGGATCGCCACGTTGCTTTGCGTGGGTTGGGTATCG
ACCCTCCAGGCGGTTGCCGA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Hemin Receptor; NB-Dependent Receptor YncD; NB-Dependent Siderophore Receptor; NB-Dependent Receptor Protein; Ferrienterobactin-Like Protein; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; Outer Membrane Ferric Siderophore Receptor; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; Iron ABC Transporter; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor; Outer Membrane Receptor YncD; Iron Complex Outer Membrane Receptor Protein; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 873; Mature: 873

Protein sequence:

>873_residues
MHSPISRSEKSTSRVRNAAPCLAGGVAALTAAGLYSPAFAEDQIVAVALPTAQVVGSTPIDSIGVPLSQFPANAQRVSAK
DAREQRNSNLADLLNDNLGQVSIGNGSGNPYQNDINYRGFQVSSLLGVPIGVSVYFDGVRMNEPFGSIVNWDLIPMNAMS
SVNILPGSNPMFGLNTLGGALVVNTKNGKDNAGTSIEALGGSFGRRALSFETGIVDKAHGTDYFVAGNFDRQDGFRDHSG
SNVKQLYGKARWHGNDGATQLELSAALADTSLSGTQSLPMDMMANRSAAYTWPDTISNRMALLNLTGSHWLNDTNQLAGS
IYYRKASLHNVNSNAQLDDGCFNDDGSLATTAAGGTTTYKCANKAPNGTAVNAVTGANALALGYGRWTNAINTSVVDSAT
HEDTVGTSLQWSNFSQLAGHDNTFTFGSAFDHSRITYDQTTYLARLINYQTVVSPNQTYGFTANGSAPSTSNPALFTGSN
VIGAVNLSSNINNFSLYFTDTLSVTEKLSVTASGSFNYTTLNQGGANNKYLNEDGGYSWTDQVSGVSYYNPGYANAYRYS
NAGSGAATAPNGVPPGAVAGPETNSLAGSHRYRRFNPALGFNYDLGAGQGIFGSYSESMRAPTSIELSCADPNSPCSLPT
GFNGDPDLKAVVAKTIEFGGRGKLGKSTYWSAAVYDSRLSNDIQFIATSNTYGYFANVGKTERRGMELGASTKIDKWSLS
ANFGYVDAIYKSAFTTASGQHVVSGNKIPGIPAKTLKLGASYAFSPNLSMGGNVILVSKQIAHGNESNADPNGEVAGYGL
VNLNLHYKPTKHLEISAYISNLFNKRYSTYGLSGMRSIYTLAKQQFMTPAPPRAIWIGLTYSFGGKAAGADAD

Sequences:

>Translated_873_residues
MHSPISRSEKSTSRVRNAAPCLAGGVAALTAAGLYSPAFAEDQIVAVALPTAQVVGSTPIDSIGVPLSQFPANAQRVSAK
DAREQRNSNLADLLNDNLGQVSIGNGSGNPYQNDINYRGFQVSSLLGVPIGVSVYFDGVRMNEPFGSIVNWDLIPMNAMS
SVNILPGSNPMFGLNTLGGALVVNTKNGKDNAGTSIEALGGSFGRRALSFETGIVDKAHGTDYFVAGNFDRQDGFRDHSG
SNVKQLYGKARWHGNDGATQLELSAALADTSLSGTQSLPMDMMANRSAAYTWPDTISNRMALLNLTGSHWLNDTNQLAGS
IYYRKASLHNVNSNAQLDDGCFNDDGSLATTAAGGTTTYKCANKAPNGTAVNAVTGANALALGYGRWTNAINTSVVDSAT
HEDTVGTSLQWSNFSQLAGHDNTFTFGSAFDHSRITYDQTTYLARLINYQTVVSPNQTYGFTANGSAPSTSNPALFTGSN
VIGAVNLSSNINNFSLYFTDTLSVTEKLSVTASGSFNYTTLNQGGANNKYLNEDGGYSWTDQVSGVSYYNPGYANAYRYS
NAGSGAATAPNGVPPGAVAGPETNSLAGSHRYRRFNPALGFNYDLGAGQGIFGSYSESMRAPTSIELSCADPNSPCSLPT
GFNGDPDLKAVVAKTIEFGGRGKLGKSTYWSAAVYDSRLSNDIQFIATSNTYGYFANVGKTERRGMELGASTKIDKWSLS
ANFGYVDAIYKSAFTTASGQHVVSGNKIPGIPAKTLKLGASYAFSPNLSMGGNVILVSKQIAHGNESNADPNGEVAGYGL
VNLNLHYKPTKHLEISAYISNLFNKRYSTYGLSGMRSIYTLAKQQFMTPAPPRAIWIGLTYSFGGKAAGADAD
>Mature_873_residues
MHSPISRSEKSTSRVRNAAPCLAGGVAALTAAGLYSPAFAEDQIVAVALPTAQVVGSTPIDSIGVPLSQFPANAQRVSAK
DAREQRNSNLADLLNDNLGQVSIGNGSGNPYQNDINYRGFQVSSLLGVPIGVSVYFDGVRMNEPFGSIVNWDLIPMNAMS
SVNILPGSNPMFGLNTLGGALVVNTKNGKDNAGTSIEALGGSFGRRALSFETGIVDKAHGTDYFVAGNFDRQDGFRDHSG
SNVKQLYGKARWHGNDGATQLELSAALADTSLSGTQSLPMDMMANRSAAYTWPDTISNRMALLNLTGSHWLNDTNQLAGS
IYYRKASLHNVNSNAQLDDGCFNDDGSLATTAAGGTTTYKCANKAPNGTAVNAVTGANALALGYGRWTNAINTSVVDSAT
HEDTVGTSLQWSNFSQLAGHDNTFTFGSAFDHSRITYDQTTYLARLINYQTVVSPNQTYGFTANGSAPSTSNPALFTGSN
VIGAVNLSSNINNFSLYFTDTLSVTEKLSVTASGSFNYTTLNQGGANNKYLNEDGGYSWTDQVSGVSYYNPGYANAYRYS
NAGSGAATAPNGVPPGAVAGPETNSLAGSHRYRRFNPALGFNYDLGAGQGIFGSYSESMRAPTSIELSCADPNSPCSLPT
GFNGDPDLKAVVAKTIEFGGRGKLGKSTYWSAAVYDSRLSNDIQFIATSNTYGYFANVGKTERRGMELGASTKIDKWSLS
ANFGYVDAIYKSAFTTASGQHVVSGNKIPGIPAKTLKLGASYAFSPNLSMGGNVILVSKQIAHGNESNADPNGEVAGYGL
VNLNLHYKPTKHLEISAYISNLFNKRYSTYGLSGMRSIYTLAKQQFMTPAPPRAIWIGLTYSFGGKAAGADAD

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 92225; Mature: 92225

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSPISRSEKSTSRVRNAAPCLAGGVAALTAAGLYSPAFAEDQIVAVALPTAQVVGSTPI
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCC
DSIGVPLSQFPANAQRVSAKDAREQRNSNLADLLNDNLGQVSIGNGSGNPYQNDINYRGF
HHHCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCE
QVSSLLGVPIGVSVYFDGVRMNEPFGSIVNWDLIPMNAMSSVNILPGSNPMFGLNTLGGA
EEEHECCCCEEEEEEECCEEECCCCCCCEEEEEEECCCCCCEEECCCCCCEEEHHCCCCE
LVVNTKNGKDNAGTSIEALGGSFGRRALSFETGIVDKAHGTDYFVAGNFDRQDGFRDHSG
EEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCEECCCCCEEEEECCCCCCCCCCCCCC
SNVKQLYGKARWHGNDGATQLELSAALADTSLSGTQSLPMDMMANRSAAYTWPDTISNRM
CCHHHHHCCCEEECCCCCEEEEEEEHHHCCCCCCCCCCCHHHHCCCCCEEECCHHHCCCE
ALLNLTGSHWLNDTNQLAGSIYYRKASLHNVNSNAQLDDGCFNDDGSLATTAAGGTTTYK
EEEEECCCCCCCCHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE
CANKAPNGTAVNAVTGANALALGYGRWTNAINTSVVDSATHEDTVGTSLQWSNFSQLAGH
ECCCCCCCCEEEEECCCCEEEEECCHHCCCCCCHHHCCCCCCCCCCCEEECCCCHHHCCC
DNTFTFGSAFDHSRITYDQTTYLARLINYQTVVSPNQTYGFTANGSAPSTSNPALFTGSN
CCEEEECCCCCCCCEEECHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCCCCEEEECCC
VIGAVNLSSNINNFSLYFTDTLSVTEKLSVTASGSFNYTTLNQGGANNKYLNEDGGYSWT
EEEEEEECCCCCEEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCH
DQVSGVSYYNPGYANAYRYSNAGSGAATAPNGVPPGAVAGPETNSLAGSHRYRRFNPALG
HCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
FNYDLGAGQGIFGSYSESMRAPTSIELSCADPNSPCSLPTGFNGDPDLKAVVAKTIEFGG
CCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
RGKLGKSTYWSAAVYDSRLSNDIQFIATSNTYGYFANVGKTERRGMELGASTKIDKWSLS
CCCCCCCCEEEHHHHHHHCCCCEEEEEECCCCEEEECCCCCHHCCCCCCCCCCCCEEEEC
ANFGYVDAIYKSAFTTASGQHVVSGNKIPGIPAKTLKLGASYAFSPNLSMGGNVILVSKQ
CCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHEECCCEEECCCCCCCCCEEEEEEH
IAHGNESNADPNGEVAGYGLVNLNLHYKPTKHLEISAYISNLFNKRYSTYGLSGMRSIYT
HCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHH
LAKQQFMTPAPPRAIWIGLTYSFGGKAAGADAD
HHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MHSPISRSEKSTSRVRNAAPCLAGGVAALTAAGLYSPAFAEDQIVAVALPTAQVVGSTPI
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCC
DSIGVPLSQFPANAQRVSAKDAREQRNSNLADLLNDNLGQVSIGNGSGNPYQNDINYRGF
HHHCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCE
QVSSLLGVPIGVSVYFDGVRMNEPFGSIVNWDLIPMNAMSSVNILPGSNPMFGLNTLGGA
EEEHECCCCEEEEEEECCEEECCCCCCCEEEEEEECCCCCCEEECCCCCCEEEHHCCCCE
LVVNTKNGKDNAGTSIEALGGSFGRRALSFETGIVDKAHGTDYFVAGNFDRQDGFRDHSG
EEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCEECCCCCEEEEECCCCCCCCCCCCCC
SNVKQLYGKARWHGNDGATQLELSAALADTSLSGTQSLPMDMMANRSAAYTWPDTISNRM
CCHHHHHCCCEEECCCCCEEEEEEEHHHCCCCCCCCCCCHHHHCCCCCEEECCHHHCCCE
ALLNLTGSHWLNDTNQLAGSIYYRKASLHNVNSNAQLDDGCFNDDGSLATTAAGGTTTYK
EEEEECCCCCCCCHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE
CANKAPNGTAVNAVTGANALALGYGRWTNAINTSVVDSATHEDTVGTSLQWSNFSQLAGH
ECCCCCCCCEEEEECCCCEEEEECCHHCCCCCCHHHCCCCCCCCCCCEEECCCCHHHCCC
DNTFTFGSAFDHSRITYDQTTYLARLINYQTVVSPNQTYGFTANGSAPSTSNPALFTGSN
CCEEEECCCCCCCCEEECHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCCCCEEEECCC
VIGAVNLSSNINNFSLYFTDTLSVTEKLSVTASGSFNYTTLNQGGANNKYLNEDGGYSWT
EEEEEEECCCCCEEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCH
DQVSGVSYYNPGYANAYRYSNAGSGAATAPNGVPPGAVAGPETNSLAGSHRYRRFNPALG
HCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
FNYDLGAGQGIFGSYSESMRAPTSIELSCADPNSPCSLPTGFNGDPDLKAVVAKTIEFGG
CCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
RGKLGKSTYWSAAVYDSRLSNDIQFIATSNTYGYFANVGKTERRGMELGASTKIDKWSLS
CCCCCCCCEEEHHHHHHHCCCCEEEEEECCCCEEEECCCCCHHCCCCCCCCCCCCEEEEC
ANFGYVDAIYKSAFTTASGQHVVSGNKIPGIPAKTLKLGASYAFSPNLSMGGNVILVSKQ
CCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHEECCCEEECCCCCCCCCEEEEEEH
IAHGNESNADPNGEVAGYGLVNLNLHYKPTKHLEISAYISNLFNKRYSTYGLSGMRSIYT
HCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHH
LAKQQFMTPAPPRAIWIGLTYSFGGKAAGADAD
HHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA