| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187929558
Identifier: 187929558
GI number: 187929558
Start: 2594663
End: 2596390
Strand: Reverse
Name: 187929558
Synonym: Rpic_2481
Alternate gene names: NA
Gene position: 2596390-2594663 (Counterclockwise)
Preceding gene: 187929561
Following gene: 187929556
Centisome position: 65.86
GC content: 63.37
Gene sequence:
>1728_bases GTGTCCCCCCAGAAAACTCTCGCTGTTGCCGTGCTTTCCACGCTGGCATGTGGTCTGTCTACACACGCGTACGCCGATGA CGATGATGCGCGCCACGCGCACGCCAAGCATGTCCTGCTGATCTCGGTCGATGGCTTGCATCAGTCCGATCTTGACTGGT ACGTCGGCAACCATCCGGGTTCCACGCTGGCGCGCCTCGTGCGCCAGGGCGTGAGCTACCGCAATGCGCGCACACCGTTC CCGTCGGACTCGTTTCCGGGCATGGTCGGCCAGGTGACTGGCGGCAACCCCAAGACCACCGGCATCTACTACGACGACGC TTACAGCCGCGGCCTGCTTCCGGCCGGCACGACGGCCGCCAACTGCCACACCACCAAGCCGGGTGCTGAAGTTTTCTATG CCGAGGTCATCGCGAAAGACCCGAACCGCCTCGACAGCGGCCAGGGCATCCCGGGCCTGTATGCCGATCTTTCGAAGATC TCGCAACTGACGGGCCGCGCGCTGGACCTGATCGATCCGGCGCTTCTACCGGTATCGCCCGTCACCTGCGCGCCGGTGTA TCCGCACCAGTATCTGAAGGTCAACACGGTATTCGAAGTGGCGCGCAAGCACGGCCTGCATACGGCATGGTCGGACAAGC ATGCCGCGTACGAAATCCTCAACGGACCGAGCGGCCAGGGTATCGACGATCTGTTCGCGCCCGAGATCAACAGCTCCGTG ACCGACCCGTCGCTGCCGGCCGGGCCCGGCGCCGACTGGACGAAAGACAACACAAACACGCAGCGTTACGACAGCTTCAA GGTGCAGGCCGTGTTGAACTGGCTCAAGGGTCACGACCACGCCGGCAACGGCACGCCGGGCGTGCCTGCCATTCTTGGCA TGAACTTCCAGGCTGTGTCGACCGCACAGAAGCTGAACAAGTCGGCGTATTACCCGGACCCATCCAACACTGCCAACAAA GTGTCGGGTGGCCTGGGTGGCTACACCAACAATGGCACGGTGCCGGGCGTGGTCCTGCAAAGCGCGCTCACCTTCGTCGA CAACAAGCTGGGCGAGCTGGTCAAGGCTGCCGACCCATCCAACACGGTGGTGATCGTGTCGGCCAAGCACGGCCAGTCAC CTAACAGCCGTGCAGACCTCACCATCATCAACGACGGCGACATGATCGACGCGCTCAACTGCGCATGGGAAAAGTACGCT GCAACGTGCAAGGACGCGACCAAGCCGCATCTCGTTGCGCACGCGATGGACGACGACGGCATTCTGCTGTGGTTGAACGA CCGCTCACCGGCCGCACTGCACTTTACGAAGCAGTTCCTGCTGGGCTACTCGGGTACAGGGCTGGGTTCGGATGCGGCGG GCAATGCCGTCGCCAAGCCCTTTACGCAAGCCGGCGCGAGCCGCTTTGTGCTGGGCGAGGAAGTGGCTGACTTCTTTGGC GCGAAGCCCAGCGATGATCGCGTTCCGGATGTTGTCGGTATCGCGCAGCAGGGCACGGTGTGGGCCGGCAGCAAGCTATC GAAGATCGCCGAGCACGGCGGCTTCCGTCCGGAAAATCGCCACGTGCCGATCGTGGTGTGGGGAGCAGGCGTCAACGCTG GCATCGTGGACGAACGCGTCGACACCAACCAGATTGCGCCGACCATCCTCAGCGAGCTGGGCCTCAAGCCGCACGAACTG CAAGCGGTGCAGATCGAGGGCACGAAGCGTCTGCCGCATCTGCACTGA
Upstream 100 bases:
>100_bases ACATTTGTCATGCAAGCGACACGGGTGGGTCGCCGCGCGGACATACAACGAGGCTAGCGTGACCGGGCCGCCTGATGGCG GCAATCCAGAGGAGAAACCC
Downstream 100 bases:
>100_bases TTCGGTTCGCGCTAAAAAAAAACGCCGGGAGATTCCCGGCGTTTTTCATGGCGCGACTGCCTTATTGCTTGGCGGGCGCA GCGGCCTTCGGTGCCGAAGC
Product: type I phosphodiesterase/nucleotide pyrophosphatase
Products: NA
Alternate protein names: Signal Peptide
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MSPQKTLAVAVLSTLACGLSTHAYADDDDARHAHAKHVLLISVDGLHQSDLDWYVGNHPGSTLARLVRQGVSYRNARTPF PSDSFPGMVGQVTGGNPKTTGIYYDDAYSRGLLPAGTTAANCHTTKPGAEVFYAEVIAKDPNRLDSGQGIPGLYADLSKI SQLTGRALDLIDPALLPVSPVTCAPVYPHQYLKVNTVFEVARKHGLHTAWSDKHAAYEILNGPSGQGIDDLFAPEINSSV TDPSLPAGPGADWTKDNTNTQRYDSFKVQAVLNWLKGHDHAGNGTPGVPAILGMNFQAVSTAQKLNKSAYYPDPSNTANK VSGGLGGYTNNGTVPGVVLQSALTFVDNKLGELVKAADPSNTVVIVSAKHGQSPNSRADLTIINDGDMIDALNCAWEKYA ATCKDATKPHLVAHAMDDDGILLWLNDRSPAALHFTKQFLLGYSGTGLGSDAAGNAVAKPFTQAGASRFVLGEEVADFFG AKPSDDRVPDVVGIAQQGTVWAGSKLSKIAEHGGFRPENRHVPIVVWGAGVNAGIVDERVDTNQIAPTILSELGLKPHEL QAVQIEGTKRLPHLH
Sequences:
>Translated_575_residues MSPQKTLAVAVLSTLACGLSTHAYADDDDARHAHAKHVLLISVDGLHQSDLDWYVGNHPGSTLARLVRQGVSYRNARTPF PSDSFPGMVGQVTGGNPKTTGIYYDDAYSRGLLPAGTTAANCHTTKPGAEVFYAEVIAKDPNRLDSGQGIPGLYADLSKI SQLTGRALDLIDPALLPVSPVTCAPVYPHQYLKVNTVFEVARKHGLHTAWSDKHAAYEILNGPSGQGIDDLFAPEINSSV TDPSLPAGPGADWTKDNTNTQRYDSFKVQAVLNWLKGHDHAGNGTPGVPAILGMNFQAVSTAQKLNKSAYYPDPSNTANK VSGGLGGYTNNGTVPGVVLQSALTFVDNKLGELVKAADPSNTVVIVSAKHGQSPNSRADLTIINDGDMIDALNCAWEKYA ATCKDATKPHLVAHAMDDDGILLWLNDRSPAALHFTKQFLLGYSGTGLGSDAAGNAVAKPFTQAGASRFVLGEEVADFFG AKPSDDRVPDVVGIAQQGTVWAGSKLSKIAEHGGFRPENRHVPIVVWGAGVNAGIVDERVDTNQIAPTILSELGLKPHEL QAVQIEGTKRLPHLH >Mature_574_residues SPQKTLAVAVLSTLACGLSTHAYADDDDARHAHAKHVLLISVDGLHQSDLDWYVGNHPGSTLARLVRQGVSYRNARTPFP SDSFPGMVGQVTGGNPKTTGIYYDDAYSRGLLPAGTTAANCHTTKPGAEVFYAEVIAKDPNRLDSGQGIPGLYADLSKIS QLTGRALDLIDPALLPVSPVTCAPVYPHQYLKVNTVFEVARKHGLHTAWSDKHAAYEILNGPSGQGIDDLFAPEINSSVT DPSLPAGPGADWTKDNTNTQRYDSFKVQAVLNWLKGHDHAGNGTPGVPAILGMNFQAVSTAQKLNKSAYYPDPSNTANKV SGGLGGYTNNGTVPGVVLQSALTFVDNKLGELVKAADPSNTVVIVSAKHGQSPNSRADLTIINDGDMIDALNCAWEKYAA TCKDATKPHLVAHAMDDDGILLWLNDRSPAALHFTKQFLLGYSGTGLGSDAAGNAVAKPFTQAGASRFVLGEEVADFFGA KPSDDRVPDVVGIAQQGTVWAGSKLSKIAEHGGFRPENRHVPIVVWGAGVNAGIVDERVDTNQIAPTILSELGLKPHELQ AVQIEGTKRLPHLH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60969; Mature: 60838
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPQKTLAVAVLSTLACGLSTHAYADDDDARHAHAKHVLLISVDGLHQSDLDWYVGNHPG CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCCCCEEECCCCH STLARLVRQGVSYRNARTPFPSDSFPGMVGQVTGGNPKTTGIYYDDAYSRGLLPAGTTAA HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCHHCCCCCCCCCCCC NCHTTKPGAEVFYAEVIAKDPNRLDSGQGIPGLYADLSKISQLTGRALDLIDPALLPVSP CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCC VTCAPVYPHQYLKVNTVFEVARKHGLHTAWSDKHAAYEILNGPSGQGIDDLFAPEINSSV CEECCCCCCHHEEHHHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCHHHHCCCCCCCC TDPSLPAGPGADWTKDNTNTQRYDSFKVQAVLNWLKGHDHAGNGTPGVPAILGMNFQAVS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHH TAQKLNKSAYYPDPSNTANKVSGGLGGYTNNGTVPGVVLQSALTFVDNKLGELVKAADPS HHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC NTVVIVSAKHGQSPNSRADLTIINDGDMIDALNCAWEKYAATCKDATKPHLVAHAMDDDG CEEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC ILLWLNDRSPAALHFTKQFLLGYSGTGLGSDAAGNAVAKPFTQAGASRFVLGEEVADFFG EEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHCCCCEEEHHHHHHHHHC AKPSDDRVPDVVGIAQQGTVWAGSKLSKIAEHGGFRPENRHVPIVVWGAGVNAGIVDERV CCCCCCCCCHHHEECCCCCEECCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCC DTNQIAPTILSELGLKPHELQAVQIEGTKRLPHLH CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure SPQKTLAVAVLSTLACGLSTHAYADDDDARHAHAKHVLLISVDGLHQSDLDWYVGNHPG CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCCCCEEECCCCH STLARLVRQGVSYRNARTPFPSDSFPGMVGQVTGGNPKTTGIYYDDAYSRGLLPAGTTAA HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCHHCCCCCCCCCCCC NCHTTKPGAEVFYAEVIAKDPNRLDSGQGIPGLYADLSKISQLTGRALDLIDPALLPVSP CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCC VTCAPVYPHQYLKVNTVFEVARKHGLHTAWSDKHAAYEILNGPSGQGIDDLFAPEINSSV CEECCCCCCHHEEHHHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCHHHHCCCCCCCC TDPSLPAGPGADWTKDNTNTQRYDSFKVQAVLNWLKGHDHAGNGTPGVPAILGMNFQAVS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCHHHHH TAQKLNKSAYYPDPSNTANKVSGGLGGYTNNGTVPGVVLQSALTFVDNKLGELVKAADPS HHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC NTVVIVSAKHGQSPNSRADLTIINDGDMIDALNCAWEKYAATCKDATKPHLVAHAMDDDG CEEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC ILLWLNDRSPAALHFTKQFLLGYSGTGLGSDAAGNAVAKPFTQAGASRFVLGEEVADFFG EEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHCCCCEEEHHHHHHHHHC AKPSDDRVPDVVGIAQQGTVWAGSKLSKIAEHGGFRPENRHVPIVVWGAGVNAGIVDERV CCCCCCCCCHHHEECCCCCEECCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCC DTNQIAPTILSELGLKPHELQAVQIEGTKRLPHLH CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA