| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
Click here to switch to the map view.
The map label for this gene is dnaG [H]
Identifier: 187929500
GI number: 187929500
Start: 2525142
End: 2526953
Strand: Reverse
Name: dnaG [H]
Synonym: Rpic_2421
Alternate gene names: 187929500
Gene position: 2526953-2525142 (Counterclockwise)
Preceding gene: 187929501
Following gene: 187929499
Centisome position: 64.09
GC content: 65.73
Gene sequence:
>1812_bases GTGATCCCGCAGCCGTTCATTGACGATCTGCTCAACCGCGTCGATATCGTCGACGTGGTGGGCCGTTACGTGCAGTTGAA GAAGGGCGGCGCCAATTTCATGGGGCTGTGCCCCTTCCATAACGAGAAGTCGCCGTCGTTCTCGGTGTCGCCCACCAAGC AGTTCTATCACTGCTTCGGCTGCGGCGCGCATGGGTCGGCCATCGGCTTCCTGATGGAGTTTTCCGGGCAATCGTACGTC GAGGCCATCAAGGATCTTGCGCAGTCCGTGGGCATGGTGGTGCCCGAAGAGCGCGGTGGCCTGCCGCCCGCCGCGCGTGC GGAGCAGCAAGCCAAGACCGTCGCACTCGGCGACGTCATGGCCCGTGCCTGCGACCACTACCGCAAGCAATTGCGCAGCG CCCCCAATGCCATCCAATACCTCAAAGGCCGCGGCCTGACGGGCGAGATCGCCGCACACTTCGGCCTCGGCTATGCGCCG GACGATTGGCAATCGCTCGAAGCCGTGTTCGGCCCATACCGCGAAGACGCCACTGCCGCACCGCTCATCGAAGCCGGCCT CGTCATTGAAAGCGAGAAGACCGGCGCCGATGGCTCGCACCGCCGCTACGACCGCTTCCGCGATCGCATCATGTTCCCCA TCCGCAATACCAAAGGCGTGGTGATCGGCTTTGGCGGCCGGGTGCTGGGGCAAGGCGAGCCGAAATATCTCAACTCCCCC GAAACGCCGCTGTTCAGCAAGGGCACCGAGCTGTACGGGCTGTTCGAGGCACGCAACGCCATCCGCGAGTTCGACTATGT GCTGGTCGTGGAAGGCTATATGGACGTCGTCGCGCTGGCGCAGCTGGGGTTTGCCAATGCGGTGGCCACGCTGGGCACGG CGTGCACGCCGACTCACGTGCAGAAGCTGCTGCGGCAGGTCGACACTGTCATCTTCTCGTTTGATGGAGATAGCGCCGGG CGCCGCGCCGCACGTCGTGCGCTCGAAGCCTGCCTGCCGCACGCCACCGACAACAAGACCATCAAGTTCCTCTTCCTGCC CGCCGAGCACGATCCGGACAGCTTCGTGCGCGAAGAGGGCACCGAGGCCTTCGCCCGTGAAGTGCACAACGCGATGCCGC TGTCGCGCTTCCTGCTCCAGGCGGTGACCGAAGATCTCGACCTGCGTCAACCCGAGGGCCGTGCCCGCGCCCAATACGAG GCCAAGCCGCTGCTGAGCGCCATGCCCGCCGGCGGCCTGCGCCTGCAGATTGTGCGCGGCCTGGCCGACATGACAGGCAC CACGCCTGCCGACATCGAAGCGCTATGTGGCCTTCGCAGCGACCCGGCCCAAGCGGGCCGCATGACGCAAAAGCGGCCCC GCGTGGCGCGCACCGCACCTACGGCGCTTGAGCAGAAGGTGTTGCGCCTGCTGATGCGCTATCCCGCGCTGGCCGCTCGG CTCGACGCCGATGCCCGCGCCCAGTTGACAGCGCCGCAATTGCCCCAAGGTGAGGTATTGGCGGCGCTGCTGGGCGAATG CGATGCTGTGGGTCCGGAAGTGCACTTCGGCGCCTTTGTTGAGCGCTTGGGGCAGACGCCCTATGCCGAGGCCTTTGCCG GGCTGCGCACGGCTGTGCTCCAGGACGACATCGAACTGGAGCCGGCCATGTCCGAATTCGATACTGCCGTACAAAAGATG CTCGCCGAGCCGCTCAAGCGCGAGCTGGAGATGTTGCAGCGCAAGATGGAAGCCGGCCATGCCGGCGACGACGACAAGGA GCGCATGCGCTGGCTGGTGGGCGAAATCAGCCGCCGCCGACAGCTCGTGTAG
Upstream 100 bases:
>100_bases GGCCGCGCCGACATGACGCAAGTCTCGGCACGCGTGAAGGCCGCCCTGGCGGGCGCCTGAATCCCCTCCACCCTCGCAGC ATCCAAGGGGCGCACCCCGC
Downstream 100 bases:
>100_bases CGCATGCGCCGCAGAGGCAAGCTCCAAGCGGGGCGGGCAATTGCGGGTAGCCCCTTGATTTTTCAGGCGAAAACCCGACT TTCGTTTAGACCGGCTTGGT
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 603
Protein sequence:
>603_residues MIPQPFIDDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFSVSPTKQFYHCFGCGAHGSAIGFLMEFSGQSYV EAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVALGDVMARACDHYRKQLRSAPNAIQYLKGRGLTGEIAAHFGLGYAP DDWQSLEAVFGPYREDATAAPLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEPKYLNSP ETPLFSKGTELYGLFEARNAIREFDYVLVVEGYMDVVALAQLGFANAVATLGTACTPTHVQKLLRQVDTVIFSFDGDSAG RRAARRALEACLPHATDNKTIKFLFLPAEHDPDSFVREEGTEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYE AKPLLSAMPAGGLRLQIVRGLADMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLMRYPALAAR LDADARAQLTAPQLPQGEVLAALLGECDAVGPEVHFGAFVERLGQTPYAEAFAGLRTAVLQDDIELEPAMSEFDTAVQKM LAEPLKRELEMLQRKMEAGHAGDDDKERMRWLVGEISRRRQLV
Sequences:
>Translated_603_residues MIPQPFIDDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFSVSPTKQFYHCFGCGAHGSAIGFLMEFSGQSYV EAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVALGDVMARACDHYRKQLRSAPNAIQYLKGRGLTGEIAAHFGLGYAP DDWQSLEAVFGPYREDATAAPLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEPKYLNSP ETPLFSKGTELYGLFEARNAIREFDYVLVVEGYMDVVALAQLGFANAVATLGTACTPTHVQKLLRQVDTVIFSFDGDSAG RRAARRALEACLPHATDNKTIKFLFLPAEHDPDSFVREEGTEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYE AKPLLSAMPAGGLRLQIVRGLADMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLMRYPALAAR LDADARAQLTAPQLPQGEVLAALLGECDAVGPEVHFGAFVERLGQTPYAEAFAGLRTAVLQDDIELEPAMSEFDTAVQKM LAEPLKRELEMLQRKMEAGHAGDDDKERMRWLVGEISRRRQLV >Mature_603_residues MIPQPFIDDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFSVSPTKQFYHCFGCGAHGSAIGFLMEFSGQSYV EAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVALGDVMARACDHYRKQLRSAPNAIQYLKGRGLTGEIAAHFGLGYAP DDWQSLEAVFGPYREDATAAPLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEPKYLNSP ETPLFSKGTELYGLFEARNAIREFDYVLVVEGYMDVVALAQLGFANAVATLGTACTPTHVQKLLRQVDTVIFSFDGDSAG RRAARRALEACLPHATDNKTIKFLFLPAEHDPDSFVREEGTEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYE AKPLLSAMPAGGLRLQIVRGLADMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLMRYPALAAR LDADARAQLTAPQLPQGEVLAALLGECDAVGPEVHFGAFVERLGQTPYAEAFAGLRTAVLQDDIELEPAMSEFDTAVQKM LAEPLKRELEMLQRKMEAGHAGDDDKERMRWLVGEISRRRQLV
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=590, Percent_Identity=41.5254237288136, Blast_Score=404, Evalue=1e-114,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016136 - InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR013173 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 66157; Mature: 66157
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPQPFIDDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFSVSPTKQFYHCFG CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHC CGAHGSAIGFLMEFSGQSYVEAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVALGDVM CCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHH ARACDHYRKQLRSAPNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYREDATAA HHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC PLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEPKYLNSP HHHHHCEEEECCCCCCCCCHHHHHHHHHHEEEEEECCCEEEEEECCEEECCCCCCCCCCC ETPLFSKGTELYGLFEARNAIREFDYVLVVEGYMDVVALAQLGFANAVATLGTACTPTHV CCCCCCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH QKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKFLFLPAEHDPDSFVREEG HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHCC TEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMPAGGLRLQIVRG HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH LADMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLMRYPALAAR HHHHCCCCCHHHHHHCCCCCCHHHHCCCHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHH LDADARAQLTAPQLPQGEVLAALLGECDAVGPEVHFGAFVERLGQTPYAEAFAGLRTAVL CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH QDDIELEPAMSEFDTAVQKMLAEPLKRELEMLQRKMEAGHAGDDDKERMRWLVGEISRRR HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH QLV CCC >Mature Secondary Structure MIPQPFIDDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFSVSPTKQFYHCFG CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHC CGAHGSAIGFLMEFSGQSYVEAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVALGDVM CCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHH ARACDHYRKQLRSAPNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYREDATAA HHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC PLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEPKYLNSP HHHHHCEEEECCCCCCCCCHHHHHHHHHHEEEEEECCCEEEEEECCEEECCCCCCCCCCC ETPLFSKGTELYGLFEARNAIREFDYVLVVEGYMDVVALAQLGFANAVATLGTACTPTHV CCCCCCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH QKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKFLFLPAEHDPDSFVREEG HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHCC TEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKPLLSAMPAGGLRLQIVRG HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH LADMTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTALEQKVLRLLMRYPALAAR HHHHCCCCCHHHHHHCCCCCCHHHHCCCHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHH LDADARAQLTAPQLPQGEVLAALLGECDAVGPEVHFGAFVERLGQTPYAEAFAGLRTAVL CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH QDDIELEPAMSEFDTAVQKMLAEPLKRELEMLQRKMEAGHAGDDDKERMRWLVGEISRRR HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH QLV CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]