Click here to switch to the map view.

The map label for this gene is ompW [H]

Identifier: 187929496

GI number: 187929496

Start: 2517557

End: 2518381

Strand: Reverse

Name: ompW [H]

Synonym: Rpic_2417

Alternate gene names: 187929496

Gene position: 2518381-2517557 (Counterclockwise)

Preceding gene: 187929497

Following gene: 187929494

Centisome position: 63.88

GC content: 63.88

Gene sequence:

>825_bases
ATGAAACAACTGACTGTCGCATTGATGGCGGCCTGCGCATCCGCAGGCGCCATGGCGCAGCAGGCCGGTGACAACGTGGC
GACGGTGGGCTGGTTCCACATCATGCCGCAGGACTCGAGCAACAACCTGACCACCAGCGTGATCAATGCGCCGATCAATG
ATCCGCTGCGCTTGCCCGGCAGCTTCACGTCGCCCAACAGCGGGCTGCGCGTAAGCAACGCCAACACGCTGGGCCTGACG
CTCACGCACTTCTTTACCGACAACATTGCGCTGACCACGATTGCCGGCGTGCCGCCCGAATTCAAGCTGACCGGGCATGG
CGTGATCCGCGCACCCGGGCCCGCAGGGGCGCTCGGCCACGTCGATCTGGACGACCCGTCCAACCAGCCGGCCGTGCGCA
AGGCGCGCCAATGGAGCCCCGGGGTCATTCTGCAGTGGTACTTCGGGCACGCGCAGTCGACGTTCCGTCCGTTCGTGGGC
GTGGGTGTGGTCTACAGCTTCTTCACCAACATCGAGCTGAATCCGTACTTTGCGGCTGCGGTGAATCGCGAACTGGGCAG
CGTGCTGGCAGCGGGGGCGGGCAAGCCGGGGCCGACGTATGTCGAGGGGAAATCGTCGTCGTCGTGGGCGCCGATCTTCA
ACCTCGGTGCGAGCTACGCGATCAACAAGCAATGGGCCTTGACGGCAACGGTGTCGTACTTGCCGCTCAAGACCGAAGCG
GCGACCGTCATCAAGGCGTCGGACGGCACCACGCTGGCCACCACCAAGACCACGCTCAAGGCCAATCCGATCATCACGTT
CGTTGGGGTGTCGTACAAGTTTTAG

Upstream 100 bases:

>100_bases
TCACCGTGGGCGCCTTCGTGCAGTGACGTTTCCGGAAACACACGCCACGGGGCGCGGCACAGAGAACCGCGCTCCGCTCA
GAACAACAGGAGGAAGCATC

Downstream 100 bases:

>100_bases
CCGGGTGTCGGCTGTCTGCGCCTGGCTAATCGGCCCGGCGTGAATCGAGCGGGAACCGGTTTGCGCCGCATTCTTAAGGC
GGTTTCTACCGTCAGTTCTA

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKQLTVALMAACASAGAMAQQAGDNVATVGWFHIMPQDSSNNLTTSVINAPINDPLRLPGSFTSPNSGLRVSNANTLGLT
LTHFFTDNIALTTIAGVPPEFKLTGHGVIRAPGPAGALGHVDLDDPSNQPAVRKARQWSPGVILQWYFGHAQSTFRPFVG
VGVVYSFFTNIELNPYFAAAVNRELGSVLAAGAGKPGPTYVEGKSSSSWAPIFNLGASYAINKQWALTATVSYLPLKTEA
ATVIKASDGTTLATTKTTLKANPIITFVGVSYKF

Sequences:

>Translated_274_residues
MKQLTVALMAACASAGAMAQQAGDNVATVGWFHIMPQDSSNNLTTSVINAPINDPLRLPGSFTSPNSGLRVSNANTLGLT
LTHFFTDNIALTTIAGVPPEFKLTGHGVIRAPGPAGALGHVDLDDPSNQPAVRKARQWSPGVILQWYFGHAQSTFRPFVG
VGVVYSFFTNIELNPYFAAAVNRELGSVLAAGAGKPGPTYVEGKSSSSWAPIFNLGASYAINKQWALTATVSYLPLKTEA
ATVIKASDGTTLATTKTTLKANPIITFVGVSYKF
>Mature_274_residues
MKQLTVALMAACASAGAMAQQAGDNVATVGWFHIMPQDSSNNLTTSVINAPINDPLRLPGSFTSPNSGLRVSNANTLGLT
LTHFFTDNIALTTIAGVPPEFKLTGHGVIRAPGPAGALGHVDLDDPSNQPAVRKARQWSPGVILQWYFGHAQSTFRPFVG
VGVVYSFFTNIELNPYFAAAVNRELGSVLAAGAGKPGPTYVEGKSSSSWAPIFNLGASYAINKQWALTATVSYLPLKTEA
ATVIKASDGTTLATTKTTLKANPIITFVGVSYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=276, Percent_Identity=24.6376811594203, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 28829; Mature: 28829

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLTVALMAACASAGAMAQQAGDNVATVGWFHIMPQDSSNNLTTSVINAPINDPLRLPG
CCHHHHHHHHHHHHCCHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEECCC
SFTSPNSGLRVSNANTLGLTLTHFFTDNIALTTIAGVPPEFKLTGHGVIRAPGPAGALGH
CCCCCCCCEEEECCCEEEEEEEEEECCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCE
VDLDDPSNQPAVRKARQWSPGVILQWYFGHAQSTFRPFVGVGVVYSFFTNIELNPYFAAA
EECCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHCHHHHHHHHHHHHHCCCCCCEEEEH
VNRELGSVLAAGAGKPGPTYVEGKSSSSWAPIFNLGASYAINKQWALTATVSYLPLKTEA
HHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHCCCCEEECCCEEEEEEEEEEEECCCC
ATVIKASDGTTLATTKTTLKANPIITFVGVSYKF
EEEEEECCCCEEEEEEEEEECCCEEEEEEEEECC
>Mature Secondary Structure
MKQLTVALMAACASAGAMAQQAGDNVATVGWFHIMPQDSSNNLTTSVINAPINDPLRLPG
CCHHHHHHHHHHHHCCHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEECCC
SFTSPNSGLRVSNANTLGLTLTHFFTDNIALTTIAGVPPEFKLTGHGVIRAPGPAGALGH
CCCCCCCCEEEECCCEEEEEEEEEECCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCE
VDLDDPSNQPAVRKARQWSPGVILQWYFGHAQSTFRPFVGVGVVYSFFTNIELNPYFAAA
EECCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHCHHHHHHHHHHHHHCCCCCCEEEEH
VNRELGSVLAAGAGKPGPTYVEGKSSSSWAPIFNLGASYAINKQWALTATVSYLPLKTEA
HHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHCCCCEEECCCEEEEEEEEEEEECCCC
ATVIKASDGTTLATTKTTLKANPIITFVGVSYKF
EEEEEECCCCEEEEEEEEEECCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]